View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_60 (Length: 212)
Name: NF8008_low_60
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 19890338 - 19890152
Alignment:
| Q |
10 |
aagaatattaatcaatgtagcccgacaaagagtcgtcagaatcggactcttcatcatttggcactagtacaggcttttcagtaattgttggtggcagatc |
109 |
Q |
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| T |
19890338 |
aagagtattaatcaatgtagcccgacaaagagtcgtcagaatcggactcttcatcatttggcactagtacaggcttttcagtaattgttggtggcatatc |
19890239 |
T |
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| Q |
110 |
atctctggacaattcaacttcaccactttcatcagctatggttaaatttataacatgatctaatggttgactttgatagggttcttg |
196 |
Q |
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| T |
19890238 |
atctctggacagttcaacttcaccattttcatcagctatggttaaatttataacatgatctaatggttgactttgatagggttcttg |
19890152 |
T |
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Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 24242295 - 24242209
Alignment:
| Q |
110 |
atctctggacaattcaacttcaccactttcatcagctatggttaaatttataacatgatctaatggttgactttgatagggttcttg |
196 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24242295 |
atctctggacaattcaacttcaccattttcatcagctatggttaaatttataacatgatctaatggttgactttgataaggttcttg |
24242209 |
T |
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