View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8008_low_7 (Length: 530)
Name: NF8008_low_7
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 18662305 - 18661808
Alignment:
| Q |
20 |
ccctaaagacaatttttagaaaaaccctaatactactcctaactaccaaaaaatatataacacggacgaccccacactccttattagtccttagtgcaag |
119 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18662305 |
ccctaaaaacactttttagcaaaaccctaatactactcctaactaccaaaaaatatataacatagacgaccccatactccttattagtccttagtgcaag |
18662206 |
T |
|
| Q |
120 |
atatggacgaccccatactccttattactccttagtgctagacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662205 |
atatggacgaccccatactccttattactccttagtgctagacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacatt |
18662106 |
T |
|
| Q |
220 |
acaaatggacatcaccttcaacaaataaagcatacactcatacacactatatatacttatacagttacattgcaattgcaacaacaaaaattaactaata |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18662105 |
acaaatggacatcaccttcaacaaataaagcatacactcatacacactatatatacttacatagttacattgcaattgcaacaacaataattaactaata |
18662006 |
T |
|
| Q |
320 |
aaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctc |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662005 |
aaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctc |
18661906 |
T |
|
| Q |
420 |
agtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18661905 |
agtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcgccatat |
18661808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 286 - 485
Target Start/End: Complemental strand, 21132930 - 21132731
Alignment:
| Q |
286 |
acattgcaattgcaacaacaaaaattaactaataaaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcctcct |
385 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||| | || | || |||||||||||||||||||| || |
|
|
| T |
21132930 |
acattgcaattgcaagaacaataattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttcccttccaatgttcatctc |
21132831 |
T |
|
| Q |
386 |
ctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatca |
485 |
Q |
| |
|
| |||||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
21132830 |
atttatcatctttgaaaaaaggctcttctctctcagtagagaaacatgcagaagatgtaattgtttcttcaaagggaactttctctgctggattctatca |
21132731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 228 - 491
Target Start/End: Complemental strand, 21127661 - 21127400
Alignment:
| Q |
228 |
acatcaccttcaacaaataaagcataca-ctcatacacactatatatacttatacag-ttacattgcaattgcaacaacaaaaattaactaataaaatgg |
325 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |||||| | |||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
21127661 |
acatcaccttcaacaactaaagcatacaactcacacacacactgtata----tacagcttacattgcaattgcaagaacaataattaactaataacatgg |
21127566 |
T |
|
| Q |
326 |
tttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctcagtaga |
425 |
Q |
| |
|
||| || ||||||||||||||| | || | || ||||||||||| |||||||| || | |||||||||||| ||| || || |||||||||||||| |
|
|
| T |
21127565 |
ttttcaaaatttcacatattttcctaatcttctttctatttccctttcaatgttcatctcatttatcatctttgaaaaagggctcttctctctcagtaga |
21127466 |
T |
|
| Q |
426 |
gaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattgg |
491 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||| || ||||||||||| ||||||||| |||| |
|
|
| T |
21127465 |
gaaacatgcagaagatgtaactgtttcttcaaagggaactttctctgctggattctatcaagttgg |
21127400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 330 - 517
Target Start/End: Complemental strand, 21120180 - 21119990
Alignment:
| Q |
330 |
cacaatttcacatattttggcagtcatgttgctatttcccttccaat---gttcctcctctgtatcatctttgataaaaggatcctctctctcagtagag |
426 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||||||||||||||||||| |||| || |||||||||||||||| || ||||| |||||||| |||||| |
|
|
| T |
21120180 |
cacaatatcatatatttttttagtcttgttgctatttcccttccaatattgttcatcttctgtatcatctttgaacaagggatcttctctctctgtagag |
21120081 |
T |
|
| Q |
427 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||||| || || || ||||| ||| |||||| |
|
|
| T |
21120080 |
aaacatacagaagatgtaattgtctcttcaaatggcactttctctgctggtttttatcaaattggtgaaaatgctttttccttcgccatat |
21119990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 21127803 - 21127704
Alignment:
| Q |
120 |
atatggacgaccccatactccttattactccttagtgcta-gacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21127803 |
atatggacgaccccatactccttattagtcctt-gtgctaagacttccaattcccaccacaaagactcgcgtcaaccattgaaagtttcaaacacgacat |
21127705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 284 - 491
Target Start/End: Original strand, 39120049 - 39120254
Alignment:
| Q |
284 |
ttacattgcaattgcaacaacaaa-aattaactaataaaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcct |
382 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||| || |||||||||| || |||| || | ||| ||||||||||||||||||| | |
|
|
| T |
39120049 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39120145 |
T |
|
| Q |
383 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
482 |
Q |
| |
|
| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
|
|
| T |
39120146 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
39120245 |
T |
|
| Q |
483 |
tcaaattgg |
491 |
Q |
| |
|
|||| |||| |
|
|
| T |
39120246 |
tcaagttgg |
39120254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 284 - 491
Target Start/End: Original strand, 39129782 - 39129987
Alignment:
| Q |
284 |
ttacattgcaattgcaacaacaaa-aattaactaataaaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcct |
382 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||| || |||||||||| || |||| || | ||| ||||||||||||||||||| | |
|
|
| T |
39129782 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39129878 |
T |
|
| Q |
383 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
482 |
Q |
| |
|
| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
|
|
| T |
39129879 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
39129978 |
T |
|
| Q |
483 |
tcaaattgg |
491 |
Q |
| |
|
|||| |||| |
|
|
| T |
39129979 |
tcaagttgg |
39129987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University