View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8009_high_12 (Length: 232)
Name: NF8009_high_12
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8009_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 49422756 - 49422972
Alignment:
| Q |
20 |
cctacatggtagtgataattggcactaaaataaatgttagagaagaatgagtataaggatgaaatcattcatggaatcaaagcaggaaaatatagtttct |
119 |
Q |
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| T |
49422756 |
cctacatggtagtgataattggcactaaaataaatgttagagaagaatgagtataaggatgaaatcattcatggaatcaaagcaggaaaatatagtttct |
49422855 |
T |
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| Q |
120 |
tcaaagatagccacatcaagaaatgtcagttcaaattttatcaatacttcagat-------------------tttgacaacagcctgtaggaagaaaga |
200 |
Q |
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| T |
49422856 |
tcaaagatagccacatcaagaaatgtcagttcaaattttatcaatacttcagatgttcaaccaagatataaagtttgacaacagcctgtaggaagaaaga |
49422955 |
T |
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| Q |
201 |
aacgtttagttcatatt |
217 |
Q |
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||||||||||||||||| |
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| T |
49422956 |
aacgtttagttcatatt |
49422972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 49431708 - 49431752
Alignment:
| Q |
20 |
cctacatggtagtgataattggcactaaaataaatgttagagaag |
64 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49431708 |
cctacatggtagtgataattggcactaaaataaatgttagagaag |
49431752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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