View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8009_high_6 (Length: 333)
Name: NF8009_high_6
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8009_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 40276429 - 40276154
Alignment:
| Q |
18 |
ccaataatgtggatggtgattatgaagcgaaaactttgttcgatgattctcctaacaatgcatctgatgccggttcaccgaaagccattgcaggcgttgt |
117 |
Q |
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| T |
40276429 |
ccaataatgtggatggtgattatgaagcgaaaactttgttcgatgattctcctaacaatgcatctgatgccggttcaccgaaagccattgcaggcgttgt |
40276330 |
T |
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| Q |
118 |
gtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgccttgaatctgaggtatgtacgtgattcatg |
217 |
Q |
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| T |
40276329 |
gtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgccttgaatctgaggtat----gtgattcatg |
40276234 |
T |
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| Q |
218 |
caatgcaacacacgtttagtatatttgtaagatttattcaacagttgatataaatttattgggtacacattctattctat |
297 |
Q |
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| T |
40276233 |
caatgcaacacacgtttagtatatttgtaagatttattcaacagttgatataaatttattgggtacacattctattctat |
40276154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 39625037 - 39624950
Alignment:
| Q |
115 |
tgtgtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgccttgaatctgaggta |
202 |
Q |
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| T |
39625037 |
tgtgtcggctcctaagcagcttccgtttgagttcaaagctcttgagtcttgtattgaatctgcttgtacctgccttgaatatgaggta |
39624950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 39634587 - 39634500
Alignment:
| Q |
115 |
tgtgtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgccttgaatctgaggta |
202 |
Q |
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| T |
39634587 |
tgtgtcggctcctaagcagcttccgtttgagttcaaagctcttgagtcttgtattgaatctgcttgtacctgccttgaatatgaggta |
39634500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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