View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8009_high_9 (Length: 270)

Name: NF8009_high_9
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8009_high_9
NF8009_high_9
[»] chr7 (14 HSPs)
chr7 (16-270)||(4712104-4712358)
chr7 (52-270)||(4846044-4846262)
chr7 (73-270)||(4653389-4653586)
chr7 (16-270)||(4697219-4697473)
chr7 (54-270)||(4672526-4672742)
chr7 (15-270)||(4666746-4667004)
chr7 (52-270)||(4783864-4784082)
chr7 (54-270)||(4643521-4643737)
chr7 (74-270)||(4863792-4863988)
chr7 (59-270)||(4816293-4816504)
chr7 (15-177)||(4630738-4630900)
chr7 (52-261)||(4647381-4647583)
chr7 (106-270)||(4662893-4663057)
chr7 (123-270)||(4636776-4636923)
[»] chr4 (1 HSPs)
chr4 (16-264)||(18925777-18926025)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 4712358 - 4712104
Alignment:
Q  16 gacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || |||||| | || ||||| |||     
T  4712358 gacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaattgaaaggttaactctttcaatttcagagcttccattttgagagtacatt 4712259  T
Q  116 gtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaa 215  Q
     ||||||||||||||||||||||||||| ||    | |||||  |||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712258 ttcacagcataatccttatgaacaggaatcatgttaccaccactccagtaaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaa 4712159  T
Q  216 aaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712158 aaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 4712104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 4846262 - 4846044
Alignment:
Q  52 tcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaagga 151  Q
    |||||||||||| || |||| ||||||||||||||||| || |||||| | || |||||  ||  ||||||||||||||||||||||||||| ||    |    
T  4846262 tcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaatcatgtta 4846163  T
Q  152 gcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaa 251  Q
     |||||  |||   |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4846162 ccaccactccaaaaaatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaa 4846063  T
Q  252 actcacaaaaatgtaacct 270  Q
    |||||||||||||||||||    
T  4846062 actcacaaaaatgtaacct 4846044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 270
Target Start/End: Original strand, 4653389 - 4653586
Alignment:
Q  73 attaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcaca 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||     ||||| |||||||    
T  4653389 attaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatgaacaggaatcaaacgagcattgctccatgaaatcaca 4653488  T
Q  173 tcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    ||||| | | |||||||||| | |||||  ||||||||||| ||||||||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  4653489 tcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaaaaatgtaacct 4653586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 4697473 - 4697219
Alignment:
Q  16 gacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcata 115  Q
    |||||||| |||  ||||| |||||| | ||||| ||||||| ||||| || |||| ||||| |||||||||||||| ||||||||||| ||||||||||    
T  4697473 gacatcaccgtatcttgtgaagatacgtcctggtgctcgttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcata 4697374  T
Q  116 gtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaa 215  Q
    | |||||||||||| |||||||||||||||| ||||| |  |  ||| | |||||||||||||| |   || |||||| ||| |   || ||||| ||||    
T  4697373 gacacagcataatctttatgaacaggaaccataggagtagtactccaagaaatcacatcagcgtttatctccgccaaagtattagctatgaatatttgaa 4697274  T
Q  216 aaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    | |||||||||||| |||| |||||| || ||||||||||||||||||| |||||    
T  4697273 agactctatcacctatatttttgatatgctgatcaaactcacaaaaatgcaacct 4697219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 4672526 - 4672742
Alignment:
Q  54 gttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaaggagc 153  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| | ||||    
T  4672526 gttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagc 4672625  T
Q  154 accagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaac 253  Q
    ||||  |||  | || ||||||||   ||  ||||||| | | | |   ||||| ||||||||  ||||||||||| ||||  ||||||||   ||||||    
T  4672626 accactccaacttataacatcagctctttcctcagccagagtgttagctataaaaatctgaaaggctctatcacctgtattaatgataagcctgtcaaac 4672725  T
Q  254 tcacaaaaatgtaacct 270  Q
    |||||||||||||||||    
T  4672726 tcacaaaaatgtaacct 4672742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 4666746 - 4667004
Alignment:
Q  15 ggacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcat 114  Q
    ||||||||| ||| |||||  ||| | |||||||| |||||||||||||||| |||| |||||||||||||||||||  ||| ||| ||| ||| | |||    
T  4666746 ggacatcactgtattttgtaaagacagtttctggtactcgttgaagcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccat 4666845  T
Q  115 agtcacagcataatccttatgaacaggaaccaaaggagcacc---agcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatc 211  Q
    |||||  ||||||||||||||||||||||||| | || ||||   |  |||   || ||| |||||   | ||||||||| ||||||||  ||||| |||    
T  4666846 agtcaaggcataatccttatgaacaggaaccatacgaacaccactactccaataaagcacgtcagcccttggttcagccataatatcatctataaaaatc 4666945  T
Q  212 tgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    ||||||||||||||||||  |||||||||| ||  |||||||||||||||||| |||||    
T  4666946 tgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaacct 4667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 4784082 - 4783864
Alignment:
Q  52 tcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaagga 151  Q
    |||||| ||||| || |||| ||||||| |||||||||||| ||||||  ||| |||   ||||||||| ||||||||||||||||||||||||||||||    
T  4784082 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaccaaagga 4783983  T
Q  152 gcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaa 251  Q
    ||||||  |||  | |||||||||||    |||||||||||| ||||||  || || |||||||||| ||||||||| |  |  |||||| ||  |||||    
T  4783982 gcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaa 4783883  T
Q  252 actcacaaaaatgtaacct 270  Q
    |||||||||||||||||||    
T  4783882 actcacaaaaatgtaacct 4783864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 4643521 - 4643737
Alignment:
Q  54 gttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaaggagc 153  Q
    |||||||||| || |||| |||| ||||||||| ||||| ||||||||||| | ||| ||||| ||  ||||||||||||||||||||||||||| ||||    
T  4643521 gttgaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagc 4643620  T
Q  154 accagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaac 253  Q
    ||||  |||    |||||||| || | || |||| ||||| | | ||  || ||||||||||| |||||||||||||||||  | |||  | ||||||||    
T  4643621 accactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatttgttatatccggatcaaac 4643720  T
Q  254 tcacaaaaatgtaacct 270  Q
    |||||||||||||||||    
T  4643721 tcacaaaaatgtaacct 4643737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 4863792 - 4863988
Alignment:
Q  74 ttaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacat 173  Q
    ||||||||||||||||||| |||||||||||||||||  |||| ||||| ||||||||||||||||||||||| | ||| |||   |||    |||||||    
T  4863792 ttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacat 4863891  T
Q  174 cagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    |||||| ||  ||||||| | ||| |   || || ||||||||  ||||||||||||||||  | |||  | |||||||||||||||||||||||||    
T  4863892 cagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaacct 4863988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 4816504 - 4816293
Alignment:
Q  59 agcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaaggagcaccag 158  Q
    ||||| || |||| ||||||| |||||||||||| ||||||  | | |||   ||||||||| ||||||||||||||||||||||| ||||||||||||     
T  4816504 agcttgatcgaaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccac 4816405  T
Q  159 cccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcaca 258  Q
     |||    |||||||||||  |  ||||||||||| ||||||  || || |||||||||| ||||||||| |  |  |||||| ||  ||||||||||||    
T  4816404 tccaccatatcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcaca 4816305  T
Q  259 aaaatgtaacct 270  Q
    ||||||||||||    
T  4816304 aaaatgtaacct 4816293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 4630738 - 4630900
Alignment:
Q  15 ggacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcat 114  Q
    |||||||||| ||  ||||||  ||| |||||||| ||||| ||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||    
T  4630738 ggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacat 4630837  T
Q  115 agtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacatcagc 177  Q
    |  |||| ||||||||||||||  |||||||| | ||||||||  |||  | |||||||||||    
T  4630838 aagcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcagc 4630900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 261
Target Start/End: Original strand, 4647381 - 4647583
Alignment:
Q  52 tcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatagtcaca-gcataatccttatgaacaggaaccaaagg 150  Q
    |||||||||||| || |||| ||||||||||||||||||| | |||||| ||| ||||| ||||   ||| ||| |||||||||  |||||        |    
T  4647381 tcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacatatgaacaagcacaatccttattgacagg--------g 4647472  T
Q  151 agcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatca 250  Q
    |||||||||||||| |||||||||||| || |||||||||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   ||||    
T  4647473 agcaccagcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaactgtatcacctgaattctttatatgtcaatca 4647572  T
Q  251 aactcacaaaa 261  Q
    |||||||||||    
T  4647573 aactcacaaaa 4647583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 270
Target Start/End: Original strand, 4662893 - 4663057
Alignment:
Q  106 agagtgcatagtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgata 205  Q
    ||||| |||||||||| |||||||||||||||||||||||| | || ||  |  |||  | |||||||| ||  ||| |||| | ||| ||||||  |||    
T  4662893 agagtacatagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctata 4662992  T
Q  206 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    || |||||||| | |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  4662993 aaaatctgaaacattctatcacctttatttatgatattcggatcaaactcacaaaaatgtaacct 4663057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 270
Target Start/End: Original strand, 4636776 - 4636923
Alignment:
Q  123 cataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactct 222  Q
    |||||||||||||||||||||||| | ||||||||  |||    |||||||| || | || |||| ||||| | | ||  || ||||||||||| |||||    
T  4636776 cataatccttatgaacaggaaccatacgagcaccactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactct 4636875  T
Q  223 atcacctttattcttgataagcagatcaaactcacaaaaatgtaacct 270  Q
    |||||||||||  |||||| ||  ||||||||||||||||||||||||    
T  4636876 atcacctttatagttgatatgccaatcaaactcacaaaaatgtaacct 4636923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 18926025 - 18925777
Alignment:
Q  16 gacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcata 115  Q
    ||||| |||||| |||| ||||||| |||||||| ||||||| ||||| || |||| ||||||||||| |||||| | ||||||||||  ||||| ||||    
T  18926025 gacattacggtattttgagtagatattttctggtgctcgttgtagctttattgaaagattaactcttttaatttgcgagcttccttctcgagagtacata 18925926  T
Q  116 gtcacagcataatccttatgaacaggaaccaaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaa 215  Q
    |||||| |||||||||||||||||||||||| | ||||||||  |||   |||||||||||| | | ||||||||||| ||||||  ||||| |||||||    
T  18925925 gtcacaacataatccttatgaacaggaaccatacgagcaccactccaatgaatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaa 18925826  T
Q  216 aaactctatcacctttattcttgataagcagatcaaactcacaaaaatg 264  Q
    ||||||||||||||| |||||| ||| ||  ||||||||| ||||||||    
T  18925825 aaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatg 18925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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