View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8009_low_11 (Length: 263)
Name: NF8009_low_11
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8009_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 13922420 - 13922660
Alignment:
| Q |
1 |
ttgaattttagaataatttatttattcgtaggagaatatacgaaaaatagagaaaatatttgtaattattctgaaaaataagttattttcaaaatatatt |
100 |
Q |
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| T |
13922420 |
ttgaattttagaataatttatttattcgtaggagaatatacgaaaaatagagaaaatatttgtaattattctgaaaaataagttattttcaaaatatatt |
13922519 |
T |
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| Q |
101 |
tggaatttacaccaagatcacaaatattatactcttaaattcacgttttagcaatattatttttacataccaatcaggcaattggaccattctgcaccac |
200 |
Q |
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| T |
13922520 |
tggaatttacaccaagatcacaaatattatactctaaaattcacgttttagcaa---tatttttacataccaatcaggcaattggactattctgcaccac |
13922616 |
T |
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| Q |
201 |
aagctcaatataccaattaggcaatgcttcgtcataaggattct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13922617 |
aagctcaatataccaattaggcaatgcttcgtcataaggattct |
13922660 |
T |
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