View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8009_low_12 (Length: 250)
Name: NF8009_low_12
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8009_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 43880502 - 43880685
Alignment:
| Q |
1 |
agaaactcggtgttaattatcgagctctaaatgacctcttcagaatttccacaagcagaggaagcctcatagactatgagatttgggttcaaatggttga |
100 |
Q |
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| T |
43880502 |
agaaactcggtgttaattatcgagctctaaatgacctcttcagaatttccacaagcagaggaagcctcatagactatgagatttgggttcaaatggttga |
43880601 |
T |
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| Q |
101 |
gatatataacgagcaagttcgtgacttgttatcaactgaggaatctccaaaaagatatccttttttaaaaatatctttagacaa |
184 |
Q |
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| T |
43880602 |
gatatataacgagcaagttcgtgacttgttatcaactgaggaatctccaaagagatatccttttttaaaaatatctttagacaa |
43880685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 43880693 - 43880727
Alignment:
| Q |
206 |
gcattaactttcccttattagttttttcttctctg |
240 |
Q |
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| T |
43880693 |
gcattaactttcccttattagttttttcttctctg |
43880727 |
T |
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