View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8009_low_15 (Length: 203)

Name: NF8009_low_15
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8009_low_15
NF8009_low_15
[»] chr8 (2 HSPs)
chr8 (17-184)||(1762080-1762247)
chr8 (17-128)||(25196654-25196765)
[»] chr7 (1 HSPs)
chr7 (17-181)||(19207093-19207257)
[»] scaffold0147 (1 HSPs)
scaffold0147 (17-125)||(9419-9527)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 1762080 - 1762247
Alignment:
Q  17 cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1762080 cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc 1762179  T
Q  117 aaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatgttt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1762180 aaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatgttt 1762247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 25196654 - 25196765
Alignment:
Q  17 cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc 116  Q
    ||||||||| ||||||  |||| ||| ||| ||| || | |||||||||||| ||||  |||||||||||||||||||||||||||| |||||| ||  |    
T  25196654 cagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgc 25196753  T
Q  117 aaagcttagaga 128  Q
    ||||||||||||    
T  25196754 aaagcttagaga 25196765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 19207093 - 19207257
Alignment:
Q  17 cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc 116  Q
    ||||||||||||||||  ||||  || ||| ||| |||| |||||||||||| |||| | ||||||||||||||||||| ||||||| |||||| ||  |    
T  19207093 cagagattaaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcac 19207192  T
Q  117 aaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatg 181  Q
    |||||||||||| |||  |||  || | | ||| || | || ||||||||| |||||||||||||    
T  19207193 aaagcttagagatcttataaaactcctctccaagatatatgttggaattccgggctttaggtatg 19207257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 9419 - 9527
Alignment:
Q  17 cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc 116  Q
    ||||||| ||| ||||| ||||  || ||| ||| |||| |||||||||||| |||| |||||||||||||||||||||  |||||| |||||| ||  |    
T  9419 cagagataaaaattgacgaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcac 9518  T
Q  117 aaagcttag 125  Q
    |||||||||    
T  9519 aaagcttag 9527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University