View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8009_low_2 (Length: 535)

Name: NF8009_low_2
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8009_low_2
NF8009_low_2
[»] chr3 (28 HSPs)
chr3 (1-535)||(28146938-28147472)
chr3 (339-526)||(28131660-28131847)
chr3 (261-535)||(28183403-28183673)
chr3 (298-526)||(28081414-28081643)
chr3 (277-535)||(17746518-17746774)
chr3 (277-535)||(19047838-19048094)
chr3 (298-535)||(27918045-27918281)
chr3 (270-535)||(28482184-28482444)
chr3 (270-535)||(28510996-28511256)
chr3 (329-531)||(28053208-28053401)
chr3 (329-531)||(28063633-28063826)
chr3 (304-494)||(27974226-27974415)
chr3 (138-222)||(28521255-28521339)
chr3 (56-141)||(28050898-28050983)
chr3 (441-535)||(28002014-28002108)
chr3 (153-215)||(28182879-28182941)
chr3 (348-535)||(27461388-27461566)
chr3 (141-201)||(28052294-28052354)
chr3 (44-144)||(28521387-28521486)
chr3 (186-260)||(28131575-28131649)
chr3 (326-391)||(18026956-18027021)
chr3 (191-264)||(28052450-28052525)
chr3 (191-264)||(28062875-28062950)
chr3 (326-390)||(27392699-27392763)
chr3 (44-147)||(28182730-28182825)
chr3 (326-391)||(11418416-11418481)
chr3 (307-390)||(27375886-27375971)
chr3 (279-320)||(28001923-28001964)
[»] scaffold0257 (3 HSPs)
scaffold0257 (261-535)||(16985-17259)
scaffold0257 (77-147)||(16686-16756)
scaffold0257 (138-207)||(16791-16861)
[»] chr7 (1 HSPs)
chr7 (438-534)||(8693685-8693781)
[»] chr2 (2 HSPs)
chr2 (297-377)||(8019573-8019652)
chr2 (307-390)||(22390808-22390893)
[»] chr4 (1 HSPs)
chr4 (15-60)||(20991463-20991508)
[»] chr5 (1 HSPs)
chr5 (17-84)||(29790498-29790566)


Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 28146938 - 28147472
Alignment:
Q  1 gaactagctacttgtaaaaactatgttaattattcaagatatgtttttcttttgaggtagccaatgatacccattgttatgaagcccttcgtccttgtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28146938 gaactagctacttgtaaaaactatgttaattattcaagatatgtttttcttttgaggtggccaatgatacccattgttatgaagcccttcgtccttgtct 28147037  T
Q  101 ccaacttatatgaaaatgtgaatgtgggcgttgattcaatggaggaagggtagcagattgaaaaacaaaaaggttggagtgttgaaaattaaataacaat 200  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28147038 acaacttatatgaaaatgtgaatgtgggggttgattcaatggaggaagggtagcagattgaaaaacaaaaaggttggagtgttgaaaattaaataacaat 28147137  T
Q  201 attaatttaattaaatactgtagtgctttctttttgttacattatattgtaataatttattccagagccttttatcatctctattgtacttatatgactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28147138 attaatttaattaaatactgtagtgctttctttttgttacattatattgtaataatttattccagagccttttatcatctctattgtacttatatgactt 28147237  T
Q  301 tgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactgaaagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |  ||    
T  28147238 tgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtggataattttctcgctttggagagactcatggt 28147337  T
Q  401 aaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcct 500  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  28147338 aacgaataactccaaagtagaaagtatcttttgtctgaatgaaataaatgaacagcaaatgaacttagctttggaagacattgatttggatgttctgcct 28147437  T
Q  501 atgatgacatgcctttttgtgggtcccaacaattc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  28147438 atgatgacatgcctttttgtgggtcccaacaattc 28147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 339 - 526
Target Start/End: Original strand, 28131660 - 28131847
Alignment:
Q  339 catttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctga 438  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |    
T  28131660 catttgttgcaggaattgagtgggaatgtggaccattttctctctttggagagactcatagtaaagaataactccaaagtagaaagtatcatttgtataa 28131759  T
Q  439 atgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcc 526  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28131760 atgaaataaatgaacagcaaatgaacttagctttgaaagacattgatttggatgttttgcctgcgatgacatgcctttttgtgggtcc 28131847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 261 - 535
Target Start/End: Original strand, 28183403 - 28183673
Alignment:
Q  261 tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtg 360  Q
    |||| ||||| ||||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  28183403 tccacagcctattatcatctctattgtacttacagaactttgttattcttattttatgcat-gtgtttatttcccattcatttattgcaggaattgagtg 28183501  T
Q  361 ggaatgtggatcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaat 460  Q
    ||||||| || ||||||    |||||||||| ||  | ||| |   | ||||||| |||||||||||| || || |  ||||||||||||||| ||||||    
T  28183502 ggaatgtcgaacatttttgtgctttggaaagtctcgaggtaga---tcactccaatgtagaaagtatctttcgtgtcgatgaaataaatgaacggcaaat 28183598  T
Q  461 gaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28183599 gaacttagctttggaagacattgatttggatgttctgcctatgatgacatgcctttttgtgggtcccaacaattc 28183673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 298 - 526
Target Start/End: Original strand, 28081414 - 28081643
Alignment:
Q  298 ctttgttattcttattttatgcat-tgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactga 396  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  | | |||      
T  28081414 ctttgatattcttattttgtgcatatgtgtttatttcccattcatttattgcaggaattgagtgggaatgtggatcattttctcgctttaaagaaacttg 28081513  T
Q  397 aagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgtttt 496  Q
      ||| | ||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |    
T  28081514 ttgtatataataactccgaagtagaaagtatcgtttgtctcaatgaaataaatgaacagaaaatgaacttagctttgaaagtcattgatttggatgttct 28081613  T
Q  497 gcctatgatgacatgcctttttgtgggtcc 526  Q
    ||||||||||||||||||||||||||||||    
T  28081614 gcctatgatgacatgcctttttgtgggtcc 28081643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 277 - 535
Target Start/End: Complemental strand, 17746774 - 17746518
Alignment:
Q  277 atctctattgtacttatatgactttgttattcttattttatgcat-tgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcatt 375  Q
    |||||||||||||||| | ||||||||||||||||||||||  || |||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||    
T  17746774 atctctattgtacttaca-gactttgttattcttattttat--atgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtggaacatt 17746678  T
Q  376 ttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaa 475  Q
    |||   ||||||||| ||| || ||||| || ||||| ||||||||||||||  ||||||| ||||||| |||||||||||||||||||||||||||| |    
T  17746677 ttcgtgctttggaaacactcaatgtaaacaaaaactctaaagtagaaagtatattttgtctcaatgaaagaaatgaacagcaaatgaacttagctttgga 17746578  T
Q  476 atacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    | | |||  ||||| |||| ||||||||||||||| |||||||||||||||||| |||||    
T  17746577 agaaattattttgggtgttctgcctatgatgacatacctttttgtgggtcccaaaaattc 17746518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 277 - 535
Target Start/End: Complemental strand, 19048094 - 19047838
Alignment:
Q  277 atctctattgtacttatatgactttgttattcttattttatgcat-tgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcatt 375  Q
    |||||||||||||||| | ||||||||||||||||||||||  || |||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||    
T  19048094 atctctattgtacttaca-gactttgttattcttattttat--atgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtggaacatt 19047998  T
Q  376 ttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaa 475  Q
    |||   ||||||||| ||| || ||||| || ||||| ||||||||||||||  ||||||| ||||||| |||||||||||||||||||||||||||| |    
T  19047997 ttcgtgctttggaaacactcaatgtaaacaaaaactctaaagtagaaagtatattttgtctcaatgaaagaaatgaacagcaaatgaacttagctttgga 19047898  T
Q  476 atacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    | | |||  ||||| |||| ||||||||||||||| |||||||||||||||||| |||||    
T  19047897 agaaattattttgggtgttctgcctatgatgacatacctttttgtgggtcccaaaaattc 19047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 298 - 535
Target Start/End: Original strand, 27918045 - 27918281
Alignment:
Q  298 ctttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactgaa 397  Q
    |||||||||| |||||||||  || ||||||||||||||||| |||||||||||| |||||||||||||| || ||||||  | |||||| ||||||       
T  27918045 ctttgttattgttattttattaat-gtgtttatttcccattcgtttattacaggatttgagtgggaatgtcgagcattttagcgctttgggaagactcgt 27918143  T
Q  398 agtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttg 497  Q
     ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||| |||| ||| |||| ||||| ||||| ||    
T  27918144 ggtaaataataactccaaagtagaaagcatcttttgtctcaatgaaataaatgaacaacaaatgaaattaggtttggaattcatttatttgaatgttctg 27918243  T
Q  498 cctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27918244 cctatgatgacatgcctttttgtgggtcccaacaattc 27918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 270 - 535
Target Start/End: Complemental strand, 28482444 - 28482184
Alignment:
Q  270 ttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtgg 369  Q
    ||||||||||||||||||||||||| |||||     |||||||||||| ||| ||||||||||||||||||||||||  ||||||  ||||||||| |||    
T  28482444 ttttatcatctctattgtacttataggacttg----ttcttattttatacat-gtgtttatttcccattcatttattgtaggaatcaagtgggaatatgg 28482350  T
Q  370 atcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagc 469  Q
    || |||||||  ||||||| | ||| |  ||||| ||||||||||||||||||  | || ||||||||||||||||||||||||| ||| ||| ||||||    
T  28482349 ataattttctagctttggagacactcatggtaaataataactccaaagtagaagatgtcttttgtctgaatgaaataaatgaacaacaactgagcttagc 28482250  T
Q  470 tttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    ||||||| | ||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||    
T  28482249 tttgaaagaaattgatttgaatgttctgcctatgatgacattcctttttgtgggtcccaaaaattc 28482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 270 - 535
Target Start/End: Complemental strand, 28511256 - 28510996
Alignment:
Q  270 ttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtgg 369  Q
    ||||||||||||||||||||||||| |||||     |||||||||||| ||| ||||||||||||||||||||||||  ||||||  ||||||||| |||    
T  28511256 ttttatcatctctattgtacttataggacttg----ttcttattttatacat-gtgtttatttcccattcatttattgtaggaatcaagtgggaatatgg 28511162  T
Q  370 atcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagc 469  Q
    || |||||||  ||||||| | |||    ||||| ||||||||||||||| ||  | || ||||||||||||||||||||||||| ||| ||| ||||||    
T  28511161 ataattttctagctttggagacactcttggtaaataataactccaaagtaaaagatgtcttttgtctgaatgaaataaatgaacaacaactgagcttagc 28511062  T
Q  470 tttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  28511061 tttgaaagacattgatttgaatgttttgcctatgatgacattcctttttgtgggtcccaaaaattc 28510996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 329 - 531
Target Start/End: Original strand, 28053208 - 28053401
Alignment:
Q  329 atttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatc 428  Q
    ||||| |||||||||||| |||||||||||||||| |||||||||||||||| || || | |||||    |||||||||||||||||||||             
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta--------- 28053298  T
Q  429 atttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtccca 528  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28053299 atttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatgatgacatgcctttttgtgggtccca 28053398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 329 - 531
Target Start/End: Original strand, 28063633 - 28063826
Alignment:
Q  329 atttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatc 428  Q
    ||||| |||||||||||| |||||||||||||||| |||||||||||||||| || || | |||||    |||||||||||||||||||||             
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta--------- 28063723  T
Q  429 atttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtccca 528  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28063724 atttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatgatgacatgcctttttgtgggtccca 28063823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 304 - 494
Target Start/End: Original strand, 27974226 - 27974415
Alignment:
Q  304 tattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaagactgaaagtaaa 403  Q
    |||||||||||||||||| ||||||||||| ||||| |||| |  |||||||||||||||||||||||||||||||| |||   | || |     |||||    
T  27974226 tattcttattttatgcat-gtgtttatttctcattcgtttactgtaggaattgagtgggaatgtggatcattttctcgcttctaagagtcccgtggtaaa 27974324  T
Q  404 gaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgtt 494  Q
     |||||||||| ||||||||||||  ||||||| ||||||||||||||||| ||||||| || || |||| ||   |||||||||||||||    
T  27974325 taataactccatagtagaaagtattgtttgtctaaatgaaataaatgaacatcaaatgatctcaggtttggaaagaattgatttggatgtt 27974415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 28521339 - 28521255
Alignment:
Q  138 aatggaggaagggtagcagattgaaaaacaaaaaggttggagtgttgaaaattaaataacaatattaatttaattaaatactgta 222  Q
    |||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  28521339 aatggaggaaggatagcagattgaaaaacaaaagtgttggagtgttgaaaagtaaatgacaatattaatttaattaaataatgta 28521255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 28050898 - 28050983
Alignment:
Q  56 ggtagccaatgatacccattgttatgaagcccttcgtccttgtctccaacttatatgaaaatgtgaatgtgggcgttgattcaatg 141  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||||  |||||||||||    
T  28050898 ggtagccaatgatagccattgttatggagcccttcgtccttgtctacaacttacacgaaaatgtgaatgtggggattgattcaatg 28050983  T

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Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 441 - 535
Target Start/End: Original strand, 28002014 - 28002108
Alignment:
Q  441 gaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    |||||||||||||| |||||||||||||||||||||   ||||| |||  |||| ||||||||||||||||||||||| |||||||||| |||||    
T  28002014 gaaataaatgaacaacaaatgaacttagctttgaaaattattgaattgcttgttctgcctatgatgacatgcctttttatgggtcccaaaaattc 28002108  T

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Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 28182879 - 28182941
Alignment:
Q  153 gcagattgaaaaacaaaaaggttggagtgttgaaaattaaataacaatattaatttaattaaa 215  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  28182879 gcagattgaaaaacaaaagggttggggtgttgaaaattaaataacaatattaatttaattaaa 28182941  T

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Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 535
Target Start/End: Complemental strand, 27461566 - 27461388
Alignment:
Q  348 caggaattgagtgggaatgtggatcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataa 447  Q
    |||||||||||||  |||||||| |||||| |||||||| ||||||| |  ||| | |||||||||||||||||||||||  ||||||         | |    
T  27461566 caggaattgagtgtaaatgtggagcattttatctctttgaaaagactcatggtagaaaataactccaaagtagaaagtatattttgtc---------tca 27461476  T
Q  448 atgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    ||||| || |||||||||||| |||  || ||||||||||| || || ||||||||||||||| ||| ||||||||||| || |||||    
T  27461475 atgaagagaaaatgaacttaggttttgaagacattgatttgtatattatgcctatgatgacattcctatttgtgggtccgaaaaattc 27461388  T

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Target: chr3; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 28052294 - 28052354
Alignment:
Q  141 ggaggaagggtagcagattgaaaaacaaaaaggttggagtgttgaaaattaaataacaata 201  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  28052294 ggaggaaggatagcagattgaaaaacaaaagggttggagtgtcgaaaattaaataacaata 28052354  T

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Target: chr3; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 28521486 - 28521387
Alignment:
Q  44 tttttcttttgaggtagccaatgatacccattgttatgaagcccttcgtccttgtctccaacttatatgaaaatgtgaatgtgggcgttgattcaatgga 143  Q
    |||||||||||  ||||| |||| ||| ||| |||||||||  |||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||    
T  28521486 tttttcttttggagtagctaatgctactcatggttatgaagatcttcgtccttgtctacaacttatacaaaaatgtgaatgtggg-gttgattcaatgga 28521388  T

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Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 28131575 - 28131649
Alignment:
Q  186 aaattaaataacaatattaatttaattaaatactgtagtgctttctttttgttacattatattgtaataatttat 260  Q
    |||||||||| |||| |||||||||||||||| |||||| ||||||||| |||||||| || | |||||||||||    
T  28131575 aaattaaatatcaatgttaatttaattaaataatgtagtactttcttttggttacattctaatataataatttat 28131649  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 18027021 - 18026956
Alignment:
Q  326 tttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaag 391  Q
    |||||||||||||||||| |  ||||||| ||||||||||||||| |||||| || ||||||||||    
T  18027021 tttatttcccattcatttgtggcaggaatggagtgggaatgtggagcattttgtcgctttggaaag 18026956  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 28052450 - 28052525
Alignment:
Q  191 aaataacaatattaatttaattaaatactgtagtgctttctttttgttacattatattg--taataatttattcca 264  Q
    ||||||||||||||||||||||||||| |||| | ||||||||| ||| ||||||| ||  |||||||||| ||||    
T  28052450 aaataacaatattaatttaattaaataatgtactactttcttttggttgcattataatgaataataatttaatcca 28052525  T

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Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 28062875 - 28062950
Alignment:
Q  191 aaataacaatattaatttaattaaatactgtagtgctttctttttgttacattatattg--taataatttattcca 264  Q
    ||||||||||||||||||||||||||| |||| | ||||||||| ||| ||||||| ||  |||||||||| ||||    
T  28062875 aaataacaatattaatttaattaaataatgtactactttcttttggttgcattataatgaataataatttaatcca 28062950  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 27392763 - 27392699
Alignment:
Q  326 tttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaa 390  Q
    |||||||||||||||||| |  ||||||| ||| ||||||||||| |||||| || |||||||||    
T  27392763 tttatttcccattcatttgtggcaggaatcgagcgggaatgtggagcattttgtcgctttggaaa 27392699  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 28182730 - 28182825
Alignment:
Q  44 tttttcttttgaggtagccaatgatacccattgttatgaagcccttcgtccttgtctccaacttatatgaaaatgtgaatgtgggcgttgattcaatgga 143  Q
    ||||||||||| ||||||||||| |||||||        |||||||| || |||||| |||||||||  ||||||||||||| || ||||||| ||| ||    
T  28182730 tttttcttttggggtagccaatgctacccat--------agcccttcctctttgtctacaacttatacaaaaatgtgaatgtaggggttgatttaataga 28182821  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 11418416 - 11418481
Alignment:
Q  326 tttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaag 391  Q
    ||||||||||||| |||| |  |||||||||||||||||  |||| |||||| || ||||||||||    
T  11418416 tttatttcccatttatttgtggcaggaattgagtgggaacatggagcattttgtcgctttggaaag 11418481  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 27375886 - 27375971
Alignment:
Q  307 tcttattttatgcat-tgtg-tttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaa 390  Q
    ||||||||||||||| |||  ||||||| |||||||||| |  ||||||||||||| ||| || || ||||||||||| |||||||    
T  27375886 tcttattttatgcatgtgtaatttatttgccattcatttgtggcaggaattgagtgtgaacgttgagcattttctctcgttggaaa 27375971  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 28001923 - 28001964
Alignment:
Q  279 ctctattgtacttatatgactttgttattcttattttatgca 320  Q
    |||| ||||| ||| |||||||||||||||||||||||||||    
T  28001923 ctctgttgtatttacatgactttgttattcttattttatgca 28001964  T

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Target: scaffold0257 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 261 - 535
Target Start/End: Original strand, 16985 - 17259
Alignment:
Q  261 tccagagccttttatcatctctattgtacttatatgactttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtg 360  Q
    |||| ||| ||||||||||||||||||| ||| |  ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||  ||||    
T  16985 tccatagctttttatcatctctattgtaattacagcactttgttattcttattttatacat-gtgtttatttcccattcatttattgcagcaatctagtg 17083  T
Q  361 ggaatgtggatcattttctctctttggaaagactgaaagtaaagaataactccaaagtagaaagtatcatttgtctgaatgaaataaatgaacagcaaat 460  Q
    ||||| ||||| |||||||| ||||||| ||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17084 ggaatatggataattttctcgctttggagagactcattgtaaagaataactccaaagtagaaagtatcttttgtctgaatgaaataaatgaacagcaaat 17183  T
Q  461 gaacttagctttgaaatacattgatttggatgtt-ttgcctatgatgacatgcctttttgtgggtcccaacaattc 535  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  17184 gaacttagctttgaaatacattgatttggatgttcctgcctatgatgacatgcctttttgtgggtcccaacaattc 17259  T

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Target: scaffold0257; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 16686 - 16756
Alignment:
Q  77 ttatgaagcccttcgtccttgtctccaacttatatgaaaatgtgaatgtgggcgttgattcaatggaggaa 147  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||    
T  16686 ttatgaagcccttcgtccttgtctgcaactaatacgaaaatgtgaatgtcggcgttgattcaatggaggaa 16756  T

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Target: scaffold0257; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 16791 - 16861
Alignment:
Q  138 aatggaggaaggg-tagcagattgaaaaacaaaaaggttggagtgttgaaaattaaataacaatattaatt 207  Q
    |||||||||| || ||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||    
T  16791 aatggaggaaaggatagcagattgaaacacagaagggttggagtgttcaaaattaaataacaatattaatt 16861  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 438 - 534
Target Start/End: Complemental strand, 8693781 - 8693685
Alignment:
Q  438 aatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttttgcctatgatgacatgcctttttgtgggtcccaacaatt 534  Q
    |||||||||||||||||||||||||||||||||||| | |  ||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||    
T  8693781 aatgaaataaatgaacagcaaatgaacttagctttggagtttattgatttggatgttcttcctatgatgacatgcctttttgtggctcccaaaaatt 8693685  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 8019573 - 8019652
Alignment:
Q  297 actttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtggatcatttt 377  Q
    |||| |||||||||||  ||||||| |||||||||||||||| ||||||| |||||||||||  |||||||||| ||||||    
T  8019573 acttggttattcttatcatatgcat-gtgtttatttcccatttatttattgcaggaattgaggaggaatgtggaacatttt 8019652  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 22390808 - 22390893
Alignment:
Q  307 tcttattttatgcat-tgtg-tttatttcccattcatttattacaggaattgagtgggaatgtggatcattttctctctttggaaa 390  Q
    ||||||||||||||| |||  ||||||| |||||||||| |  ||||||||||||| ||| ||||| ||||||||||| |||||||    
T  22390808 tcttattttatgcatgtgtaatttatttgccattcatttgtggcaggaattgagtgcgaacgtggagcattttctctccttggaaa 22390893  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 20991463 - 20991508
Alignment:
Q  15 taaaaactatgttaattattcaagatatgtttttcttttgaggtag 60  Q
    ||||||||||| || ||||||||||| ||||||||||||| |||||    
T  20991463 taaaaactatgctacttattcaagatttgtttttcttttggggtag 20991508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 29790566 - 29790498
Alignment:
Q  17 aaaactatgttaattattcaagatatgtttttcttttgaggtagccaatgata-cccattgttatgaag 84  Q
    ||||||||  ||||||| |||||| | ||||||||||| ||||||||||| || ||||||||| |||||    
T  29790566 aaaactatactaattatacaagatttatttttcttttggggtagccaatgctaccccattgttgtgaag 29790498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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