View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8009_low_5 (Length: 351)
Name: NF8009_low_5
Description: NF8009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8009_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 20753481 - 20753810
Alignment:
| Q |
13 |
aatattaacaacaaacatttgtttgaaaacccaagagagtgaaatttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccag |
112 |
Q |
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| T |
20753481 |
aatactaacaacaaacaaatgtgtgaaaacccaagagagtgaactttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccag |
20753580 |
T |
|
| Q |
113 |
ttggtttcttacttggaaaatcaatgccatagtaaggaagaattgcctttacaagagaaagagtcaagtgattgttgttgccaacatcaacaagtgaatc |
212 |
Q |
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| T |
20753581 |
ttggtttcttagttggaaaatcaatgccatagtaaggaagaattgcctttacaagagaaagagtcaagtgattattgttgccaacatcaacaagtgaatc |
20753680 |
T |
|
| Q |
213 |
tccaaacacataaatagctggagtcttctgagcttctaagaatcctaagcttataaagatgaagaaaga------tagaaaggaattccttatcataact |
306 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||| |||| |||||| |||||||||||||||||| |
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| T |
20753681 |
tccaaacacataaatagctggagtcttttgagcttctaagaatcctaagctgaagaagacaaagcaagagataagtagaaatgaattccttatcataact |
20753780 |
T |
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| Q |
307 |
atggaaatatccattttggaatttggtttt |
336 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
20753781 |
atggaaatatccattttggaatttgttttt |
20753810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 57 - 312
Target Start/End: Original strand, 20759213 - 20759474
Alignment:
| Q |
57 |
tttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttacttggaaaatcaatgccatagtaaggaagaatt |
156 |
Q |
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| T |
20759213 |
tttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttagttggaaaatcaatgccatagtgaggaagagtt |
20759312 |
T |
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| Q |
157 |
gcctttacaagagaaagagtcaagtgattgttgttgccaacatcaacaagtgaatctccaaacacataaatagctggagtcttctgagcttctaagaatc |
256 |
Q |
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| T |
20759313 |
gcttttacaagggaaagagtcaagtaattgttattgccaacatcaacaagtgagtctccaaacacataaatagctggagtcttttgagcttttaagaacc |
20759412 |
T |
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| Q |
257 |
ctaagcttataaagatgaagaaag------atagaaaggaattccttatcataactatggaa |
312 |
Q |
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||||||| | ||||| ||| ||| ||||||| |||||||| ||||||||||||||| |
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| T |
20759413 |
ctaagctgaagaagataaagcaagagataaatagaaatgaattcctcatcataactatggaa |
20759474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 20802101 - 20802312
Alignment:
| Q |
67 |
ttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttacttggaaaatcaatgccatagtaaggaagaattgcctttacaa |
166 |
Q |
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||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||||||| ||||||||||||| ||| || ||| ||| |
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| T |
20802101 |
ttaccaatcaaatcagcagcattcttgccattgcaaaatctcccagcaggtttcttagttggaaaatcaataccatagtaaggaaaaatagcttttgcaa |
20802200 |
T |
|
| Q |
167 |
gagaaagagtcaagtgattgttgttgccaacatcaacaagtgaatctccaaacacataaatagctggagtcttctgagcttctaagaatcctaagcttat |
266 |
Q |
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| | | |||||| ||| ||||| ||||||||||||||||| || ||||||||||||| ||| ||| ||| |||||||||||||||||||| ||| |
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| T |
20802201 |
aggtatcattcaagtaattattgtttccaacatcaacaagtgagtcaccaaacacataaacagcaggaaccttttgagcttctaagaatcctaaactt-- |
20802298 |
T |
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| Q |
267 |
aaagatgaagaaaga |
281 |
Q |
| |
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|||||||||||||| |
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| T |
20802299 |
-aagatgaagaaaga |
20802312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 40638741 - 40638575
Alignment:
| Q |
68 |
taccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttacttggaaaatcaatgccatagtaaggaagaattgcctttacaag |
167 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||| | | | |||||||||| ||||||| | || || ||||||| ||| |
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| T |
40638741 |
taccaataaaatcagcagcatttttgccattgctaaatctcccagttggtttgtgattaagaaaatcaataccatagtgacgatgatttgccttggcaat |
40638642 |
T |
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| Q |
168 |
agaaagagtcaagtgattgttgttgccaacatcaacaagtgaatctccaaacacataaatagctgga |
234 |
Q |
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||| |||||||||| ||| ||||| |||||||| |||||||| |||||||| ||||||| ||||||| |
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| T |
40638641 |
agatagagtcaagtaattattgtttccaacatctacaagtgagtctccaaaaacataaacagctgga |
40638575 |
T |
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