View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8010_high_2 (Length: 496)
Name: NF8010_high_2
Description: NF8010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8010_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 46631959 - 46632438
Alignment:
| Q |
1 |
ctacaaagtaattatatttattactccccccacaagctggaggatgcacatcgatgagaccaagcttggaaatcaaatggagaaatgctggttttgctag |
100 |
Q |
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| T |
46631959 |
ctacaaagtaattacatttattactccccccacaagctggaggatgcacatcgatgagaccaagcttggaaatcaaatggagaaatgctggttttgctag |
46632058 |
T |
|
| Q |
101 |
aggttttgttagcagatcagtaatctcggcagcagaagaagtaagaaataatttgatgattcctagttccaatttttctcttatgatgtggcaatcgatt |
200 |
Q |
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| T |
46632059 |
aggttttgttagcagatcagtaatctcggcagcagaagaagtaagaaataatttgatgattcctagttccaatttttctcttatgatgtggcaatcgatt |
46632158 |
T |
|
| Q |
201 |
ttgatgtgttttgtcagctcatggaaggtgggattatgagctagatacaccacaatttggttagcacaatatatagaagttggcttaggaaaataaatgt |
300 |
Q |
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| T |
46632159 |
ttgatgtgttttgtcagctcatggaaggtgggattatgagctagatacaccacaatttggttagcacaatatatagaagttggcttaggaaaataaatgt |
46632258 |
T |
|
| Q |
301 |
ttagatcattgaaaatgtaatgtaaccattgaatctcacaagtgaggctagccaaagctctatattccgcttctgaactggatctcgactgcaaatcctt |
400 |
Q |
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| T |
46632259 |
ttagatcattgaaaatgtaatgtaaccattgaatctcacaagtgaggctagccaaagctctatattccgcttctgaactggatctcgactgcaaatcctt |
46632358 |
T |
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| Q |
401 |
taactgacctagtaggacatgtagcccaatgactgtttgcaaaaccagaaagacataaatcagaattggaaggataaaat |
480 |
Q |
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| T |
46632359 |
taactgacctagtaggacatgtagcccaatgactgtttgcaaaacaagaaagacataaatcagaattggaaggataaaat |
46632438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 8639761 - 8639697
Alignment:
| Q |
303 |
agatcattgaaaatgtaatgtaaccattgaatctcacaagtgaggctagccaaagctctatattc |
367 |
Q |
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| T |
8639761 |
agatctttgaagatgtaatgaagccattgaatctcacaagtaaggctggctaaggctctgtattc |
8639697 |
T |
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