View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8010_low_1 (Length: 765)
Name: NF8010_low_1
Description: NF8010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8010_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 200 - 484
Target Start/End: Original strand, 4700228 - 4700513
Alignment:
| Q |
200 |
ttaattatatggatacttgagaaaatgattgatgaagtctaatctcaacgttttaatcccattagtattttacattacatttaccacttaatattgaaca |
299 |
Q |
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| T |
4700228 |
ttaattatatggatacttgagaaaatgattgatgaagtctaatctcaacgttttcatcccattagtattttaaattacttttaccacttaatattgaaca |
4700327 |
T |
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| Q |
300 |
aactttatgaaccactcacaaactatttcaaacttaagattataataaactttgtctaacatcataatatcattcaagtccttttgaataccgtaaaac- |
398 |
Q |
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| T |
4700328 |
aactttatgaaccactcacaaattatttcaaacttaagattataataaactttgtcgaacatcataatatcattcaagtccttttgaataccgtaaaact |
4700427 |
T |
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| Q |
399 |
tttcatacttacttttgagctacatacatcatgtatagcatcaaaatcacgagcataaatcgtatatgcagccattcgagctagtt |
484 |
Q |
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| T |
4700428 |
tttcatacttacttttgagctacaaacatcatgtatatcatcaaaatcatgagcataagttgtgtatgcagtcattcgagctagtt |
4700513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 471 - 751
Target Start/End: Original strand, 4700532 - 4700819
Alignment:
| Q |
471 |
cattcgagctagttgatgagccactacattaacctgtatgttaataaattctacgaaataattagaactataaatagacnnnnnnn--------cgaatt |
562 |
Q |
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| T |
4700532 |
cattcgagctagttgatgagccactacattaactcgt-tgttaataaattctacgaaataattagaactataaatagaaaaaaaaaaaaaaaaacgaatt |
4700630 |
T |
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| Q |
563 |
caatcatttgtcatatctattagttcatcaacaattaaattatgataaaatatgatatttcatcctggcttttttataagagacgtttagatcaatataa |
662 |
Q |
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| T |
4700631 |
caatcatttgtcatatctattagttcatcaacaattaaattatgataaaatatgatatttcatcctgtcttttttataagagacgtttagattaatataa |
4700730 |
T |
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| Q |
663 |
attgatgtatttagtttaaaatttagattgaatacataaatttttgttaatctaaatgtctcttatgaataagacctccgtcacatatt |
751 |
Q |
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| T |
4700731 |
attgatgtatttagctcaaaatttagaccgaatacataaatttttgttaatccagatgtctcttatgaataagacctctgtcacatatt |
4700819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 4699918 - 4700000
Alignment:
| Q |
123 |
cttgatctatcatcttattaatgaattagttacttttaaatagac----ggtcacagtgatgttagctacaaatatgtgtatt |
201 |
Q |
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| T |
4699918 |
cttgatatatcatcttattaatgaattaattacttttgaatagacattggatgaatgtgatgttagctacaaatatgtgtatt |
4700000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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