View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8010_low_2 (Length: 690)
Name: NF8010_low_2
Description: NF8010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8010_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 40 - 677
Target Start/End: Original strand, 24992775 - 24993405
Alignment:
| Q |
40 |
agttgctaaagtggttcgatttgacgannnnnnnacgcaattttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcag |
139 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24992775 |
agttgctaatgtggttcgatttgacgatttttttactcaattttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcag |
24992874 |
T |
|
| Q |
140 |
aagctctatattcaattaatcagaagctcaagcggagatcatagcccgaaaactttgaatgacttagagaaaagacagttgaattgaagaggtcacctct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24992875 |
aagctctatattcaattaatcagaagctcaagcggagatcatagcccgaaaactttgaatgacttagagaaaagacagttgaa-----gaggtcacctct |
24992969 |
T |
|
| Q |
240 |
gatctgattttcagtttctctatattcaattaatttcgaacttttaaaattatcatgtcattagtgttcagattattattcaaaccttatttcttattaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24992970 |
gatctgattttcagtttctctatattcaattaatttcgaacttttaaaattatcatgccattagtgttcagattattatgcaaaccttatttcttattaa |
24993069 |
T |
|
| Q |
340 |
tttttggcttgtgatatctattgtagggtgtggctggtgatagaatcaacggtgtaaatcagcactcttaaaggtttgtgtgtagatgaatgtgtgtgta |
439 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
24993070 |
ttttttgcttgtgatatctattgtagggtgtggctggtgatagtatcaacggtgtaaatcagcactcgtaaaggtttgtgtgtagatgaatgtg----ta |
24993165 |
T |
|
| Q |
440 |
tatttatctatatagcttttgaatacaaaactaaagctgcaaatttacaacaagtatggcatctgcaaaatgctagcatgtgcagtaaactgatttatta |
539 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24993166 |
tatttagatatatagcttttgaatacaaaactaaagctgcaaatttacaacaagtatggcatctgcaaaatgctagcatgtgcagtaaactgatttaata |
24993265 |
T |
|
| Q |
540 |
ttgttaaataatgtgttggagcggctcaaatatgaacaagatgatatcgatgaaaattcggtcacaggtttttggctctctctgtgcccatcctttggga |
639 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24993266 |
ttgttaaataatgtgttggagcggctaaaatatgaacgagatgatatcgatgaaaattcggtcactggtttttggctctctctgtgcccatcctttggga |
24993365 |
T |
|
| Q |
640 |
aatacgagttaatgttgctc--atgttttcgtcacaggtt |
677 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24993366 |
aatacgagttaatgttgctcatatgttttcgtcacaggtt |
24993405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 1618104 - 1618173
Alignment:
| Q |
366 |
ggtgtggctggtgatag-aatcaacggtgtaaatcagcactcttaaaggtttgtgtgtagatgaatgtgt |
434 |
Q |
| |
|
||||||||| |||||| ||| || |||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1618104 |
ggtgtggcttgtgataataattaagggtgtaaaccagcactcttaaaggtttgtgcttagatgaatgtgt |
1618173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University