View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8010_low_7 (Length: 383)
Name: NF8010_low_7
Description: NF8010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8010_low_7 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 15341 - 15715
Alignment:
| Q |
1 |
tcaacaatttcatcatcatcggatggaccagcaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15341 |
tcaacaatttcatcatcatcggatggaccagtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctc |
15440 |
T |
|
| Q |
101 |
ccttagacttctccctggagctcgatccatttcccgtcacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15441 |
ccttagacttctccctggagctcgatccatttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatt |
15540 |
T |
|
| Q |
201 |
taactgtccaacattaattcatatagaaaatgtaaataacaaaacctggagatcgacgtttgagcgaataaacaagacacggttgaattcaggatccttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15541 |
taactgtccaacattaattcatatagaaaatgtaaataacaaaaccttgagatcgacgtttgagcgaataaacaagacacggttgaattcaggatccttg |
15640 |
T |
|
| Q |
301 |
attattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttctgatgtccat |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15641 |
attattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttctgatgtccat |
15715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 39454399 - 39454025
Alignment:
| Q |
1 |
tcaacaatttcatcatcatcggatggaccagcaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctc |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454399 |
tcaacaatttcatcatcatcggatggaccagtaaccgcagtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctc |
39454300 |
T |
|
| Q |
101 |
ccttagacttctccctggagctcgatccatttcccgtcacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454299 |
ccttagacttctccctggagctcgatccatttcccattacactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatt |
39454200 |
T |
|
| Q |
201 |
taactgtccaacattaattcatatagaaaatgtaaataacaaaacctggagatcgacgtttgagcgaataaacaagacacggttgaattcaggatccttg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39454199 |
taactgtccaacattaattcatatagaaaatgtaaataacaaaaccttgagatcgacgtttgagcgaataaacaagacacggttgaattcaggatccttg |
39454100 |
T |
|
| Q |
301 |
attattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttctgatgtccat |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39454099 |
attattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttctgatgtccat |
39454025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 39461919 - 39461739
Alignment:
| Q |
39 |
agtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatccatttcccgtc |
138 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| || | ||| || | ||||||||||| ||||||||||||| |||| || ||||| || || | |
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| T |
39461919 |
agtgacagccatagagttctcatcctgttttggtgcctcaagatgcacctttttgattgctaccttagacttctctatggaagtccatccacttgccatt |
39461820 |
T |
|
| Q |
139 |
acactcaaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacattaattca |
221 |
Q |
| |
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|||| ||| |||||||| |||||||||||| |||||||||| ||||| |||||| ||||||| || ||| |||||||||||| |
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| T |
39461819 |
tcacttaaaattctccatgtatcctatccaa-cccacataaccaaacctttagattcacattt-acagtctaacattaattca |
39461739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 39461630 - 39461545
Alignment:
| Q |
289 |
tcaggatccttgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttctgatgtccat |
375 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||||||| | ||||||||||||| || ||||||||||||||||||||| |
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| T |
39461630 |
tcaggatccttgagtattgtacgcc-tttacccacccaatgcttgagagctccagctttaagtgccgcttcctcttctgatgtccat |
39461545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 375
Target Start/End: Complemental strand, 38813317 - 38813184
Alignment:
| Q |
242 |
aaacctggagatcgacgtttgagcgaataaacaagacacggttgaattcaggatccttgattattgtacgccattttcccaccccatgcttggcaactcc |
341 |
Q |
| |
|
|||||| |||||| | |||||||| ||| |||| ||| |||| || ||||||||||||| |||| | | |||||| ||||||||||| ||| ||||||| |
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|
| T |
38813317 |
aaaccttgagatcaatatttgagcggatatacaacacatggttaaactcaggatccttgagtattttgctccatttccccaccccatgtttgacaactcc |
38813218 |
T |
|
| Q |
342 |
agctttaagagctgcttcctcttctgatgtccat |
375 |
Q |
| |
|
|||||| || || |||||||||| |||| |||| |
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| T |
38813217 |
agctttgagtgccacttcctcttccgatgaccat |
38813184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 38813533 - 38813364
Alignment:
| Q |
45 |
agccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatccatttcccgtcacactc |
144 |
Q |
| |
|
|||||| ||||||||| ||||| |||| || ||||| || ||||||||||||| || ||| || |||| |||| ||||||||| || ||| ||| |
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|
| T |
38813533 |
agccatggagttgtcacgctgttctggtgcctgatgacgcacccttttgattgctagctgagagttgtccccggaggatgatccatttgccttcaggctc |
38813434 |
T |
|
| Q |
145 |
aaatttctccatttatcctatccaaccccacataacaaaaccattagatccacatttaactgtccaacatt |
215 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||||| ||||| | |||| ||||||| | |||||||||| |
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| T |
38813433 |
atatttctccatttatcctatccaa-ccaacataaccaaaccttgagattcacatttgatggtccaacatt |
38813364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 12079604 - 12079423
Alignment:
| Q |
39 |
agtgatagccatagagttgtcatcctgttttggtaccggatgattcaaccttttgattgctcccttagacttctccctggagctcgatccatttcccgtc |
138 |
Q |
| |
|
||||| ||||||||||||||| || ||| ||||| || ||| || || |||||| ||||||||||| | ||||||||| || | ||||| || || || |
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| T |
12079604 |
agtgacagccatagagttgtcctcatgtcttggtgcctgataatgcacccttttcattgctccctttggcttctccctcgaagcccatccacttgccatc |
12079505 |
T |
|
| Q |
139 |
acactcaaatttctccatttatcctatccaac--cccacataacaaaaccattagatccacatttaactgtccaacattaat |
218 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||| |||| || ||||||||||||| |
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|
| T |
12079504 |
acgctcaaatttcgccatttatcctatccaacaacccacataaagaaacctttagatccagattttacggtccaacattaat |
12079423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 12086359 - 12086285
Alignment:
| Q |
291 |
aggatccttgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttc |
365 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
12086359 |
aggatccttgagtattgtatgccatttgcccaccccatgcttgacaactccagctttaagacccgcttcctcttc |
12086285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 12079338 - 12079253
Alignment:
| Q |
281 |
ggttgaattcaggatccttgattattgtacgccattttcccaccccatgcttggcaactccagctttaagagctgcttcctcttct |
366 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||| || | |||||||||| |
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|
| T |
12079338 |
ggttaaattcaggatccttgaggatcgtacgccatttacccaccccatgcttgataactccagctttaagtgcggattcctcttct |
12079253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 374
Target Start/End: Original strand, 39409562 - 39409694
Alignment:
| Q |
242 |
aaacctggagatcgacgtttgagcgaataaacaagacacggttgaattcaggatccttgattattgtacgccattttcccaccccatgcttggcaactcc |
341 |
Q |
| |
|
|||||| ||||| ||| ||||||| |||| | ||||||||||| || || |||| ||||| || ||||| |||||| ||||||||||||||| ||||||| |
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| T |
39409562 |
aaaccttgagattgacatttgagcaaatatataagacacggttaaactctggattcttgagtactgtacaccatttacccaccccatgcttgacaactcc |
39409661 |
T |
|
| Q |
342 |
agctttaagagctgcttcctcttctgatgtcca |
374 |
Q |
| |
|
||||||| || |||||||||||||||||||| |
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|
| T |
39409662 |
agctttactcgccgcttcctcttctgatgtcca |
39409694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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