View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8011_high_1 (Length: 455)
Name: NF8011_high_1
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8011_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 43176053 - 43176460
Alignment:
| Q |
18 |
gtcaggtcatcgaggcttcactggacagcgtgggttttggtccccacgatgctcaacttgatctcacccaaggaattcccaggttttcatttttcaccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43176053 |
gtcaggtcatcgaggcttcactggacagcgtgggttttggtccccatgatgctcaacttgatctcgcccaaggaattcccaggttttcatttttcaccaa |
43176152 |
T |
|
| Q |
118 |
cttacaaaaataaggaaattcttaccaaattctatatgctaattttgtgattttttcacttaaattttttgggttggattgaccatttggactctcttgc |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
43176153 |
cgtacaaaaataaggaaattcttaccaaattctatatgctaattttgtgattttttcacttaaattttctgggttggattgaccatttggactcttttgc |
43176252 |
T |
|
| Q |
218 |
ttatatgcacttgtaaatctaaaccgtccgatctaaatcatcggtaaagattatttaaaattgatttgttgaaaattgattcgttattatgaagatacta |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43176253 |
ttatatgcacttgtcaatctaaaccgtccgatctaaatcatcggtaaagattatttaaaattgatttgttgaaaattgattcgttattatgaagatacta |
43176352 |
T |
|
| Q |
318 |
aaatttaatgctatgtgtatatcttagaaacaatgaagaatctgcacgtaatttgaactagtagaatctattaggggtgttcatacttcatagtataact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43176353 |
aaatttaatgctatgtgtatatcttagaaacaatgaagaatctgcacgtaatttgaactagtagaatctattaggggtgttcatacttcatagtataact |
43176452 |
T |
|
| Q |
418 |
gatattag |
425 |
Q |
| |
|
|||||||| |
|
|
| T |
43176453 |
gatattag |
43176460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University