View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8011_high_2 (Length: 379)

Name: NF8011_high_2
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8011_high_2
NF8011_high_2
[»] chr1 (3 HSPs)
chr1 (17-379)||(51318884-51319246)
chr1 (90-338)||(51342776-51343024)
chr1 (215-313)||(51312728-51312826)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 51318884 - 51319246
Alignment:
Q  17 aaaccatgactcatcactgtgaattagaagatcttgatttatatgaggtgatccaaatcttcctttagaaacaaactttccagccaagtgaagaacattg 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51318884 aaaccatgactcatcactgtgaattagaagatcttgatgtatatgaggtgatccaaatcttcctttagaaacaaactttccagccaagtgaagaacattg 51318983  T
Q  117 tttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaagttcttgtcggtgtaaaatcgcaacgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51318984 tttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaagttcttgtcggtgtaaaatcgcaacgt 51319083  T
Q  217 gaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtgctgcatc 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51319084 gaagtaaactttgcccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaactgtgctgcatc 51319183  T
Q  317 aaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccattctctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51319184 aaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccattctctc 51319246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 90 - 338
Target Start/End: Original strand, 51342776 - 51343024
Alignment:
Q  90 aactttccagccaagtgaagaacattgtttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaa 189  Q
    |||||||||||||||||||||| ||||||||||||  |||||| |  |||||| |||||||| ||||||||||||||  | ||||||| | | || |||     
T  51342776 aactttccagccaagtgaagaatattgtttccctcgagatcaatatgttgcactaaaacattcttgtatgaaccctttgtgaatattaaacgatatacac 51342875  T
Q  190 gttcttgtcggtgtaaaatcgcaacgtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaat 289  Q
     | |||  |  | ||| || |||| ||||||||  ||||| ||||  |||||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  51342876 ttcctttcctatataagatagcaatgtgaagtatgctttgcccttttgaattgacttccatgaatagattcggattgtagttgaagataaaatctaaaat 51342975  T
Q  290 taagatgttgcctaattgtgctgcatcaaacattgcttttgaagttttt 338  Q
    ||  ||||| ||| ||| |||||| ||||||||||||||||||||||||    
T  51342976 tataatgtttcctgattttgctgcctcaaacattgcttttgaagttttt 51343024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 51312728 - 51312826
Alignment:
Q  215 gtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtgctgc 313  Q
    |||||||||  |||| |||| || ||||||||||||||| | ||| || |||||||| |||||||||| |||||  | |||||| ||| ||| ||||||    
T  51312728 gtgaagtaagttttgcccttgaggattgacttccataaacaaattggggttatagttaaaaataaattttaaaaccatgatgtttcctgattttgctgc 51312826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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