View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8011_low_1 (Length: 705)

Name: NF8011_low_1
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8011_low_1
NF8011_low_1
[»] chr8 (5 HSPs)
chr8 (353-689)||(4620198-4620534)
chr8 (34-297)||(4620617-4620886)
chr8 (559-689)||(1846900-1847030)
chr8 (525-657)||(4787123-4787255)
chr8 (519-653)||(4298017-4298151)
[»] chr1 (13 HSPs)
chr1 (532-689)||(40034320-40034477)
chr1 (541-689)||(7890673-7890821)
chr1 (532-683)||(51292129-51292280)
chr1 (549-671)||(38137497-38137619)
chr1 (552-671)||(7888419-7888538)
chr1 (519-689)||(43045955-43046125)
chr1 (532-689)||(45983332-45983489)
chr1 (557-689)||(3301238-3301370)
chr1 (519-689)||(45993099-45993269)
chr1 (548-689)||(43084383-43084524)
chr1 (557-689)||(43066320-43066452)
chr1 (632-689)||(43045502-43045559)
chr1 (453-498)||(45983246-45983291)
[»] chr2 (5 HSPs)
chr2 (548-689)||(34691333-34691474)
chr2 (548-689)||(34713745-34713886)
chr2 (548-689)||(16232682-16232823)
chr2 (541-689)||(33861347-33861495)
chr2 (453-498)||(33861558-33861603)
[»] chr4 (2 HSPs)
chr4 (557-681)||(4231983-4232107)
chr4 (543-616)||(19964623-19964696)
[»] chr5 (1 HSPs)
chr5 (527-618)||(16352207-16352298)
[»] chr6 (2 HSPs)
chr6 (557-689)||(7528735-7528867)
chr6 (557-671)||(7519364-7519478)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 353 - 689
Target Start/End: Complemental strand, 4620534 - 4620198
Alignment:
Q  353 accctgtacctatgtatcataggttatcattggttttgcnnnnnnngacttgtcagaatgttattcttttgttttgttggtagctagcatactgaaagta 452  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4620534 accctgtacctatgtatcataggttatcattggttttgctttttttgacttgtcaaaatgttattcttttgttttgttggtagctagcatactgaaagta 4620435  T
Q  453 atttattttactaatgtcctgttgttttctgtgttgaattggcagaattccaagattaaggtgcaataatggataaaggaaaggttggtattaatattgt 552  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620434 atttattttacttatgtcctgttgttttctgtgttgaattggcagaattccaagattaaggtgcaataatggataaaggaaaggttggtattaatattgt 4620335  T
Q  553 gtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaa 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4620334 gtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggatgtcattgagcgatttgagaaa 4620235  T
Q  653 gaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    |||||||||||||||||||||||||||||||||||||    
T  4620234 gaagccgctgagataaacatgtgttcattcaaatatg 4620198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 34 - 297
Target Start/End: Complemental strand, 4620886 - 4620617
Alignment:
Q  34 ggaaccaatctgctcctctctacaatatttctcttccttccagggcaagctttctttttcttcaatttcgtatcgtcccgactcgtaagcgattgtatgt 133  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620886 ggaaccaatctgctcctctctacaatctttctcttccttccagggcaagctttctttttcttcaatttcgtatcgtcccgactcgtaagcgattgtatgt 4620787  T
Q  134 atatgatcgttagatattgttttgtttctttgttttctgctctttcttttcgattatgttaataata------atacttgtcttatttataaccgttgtt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||  ||||||||||||||||||||||    
T  4620786 atatgatcgttagatattgttttgtttctttgttttctgctctttcttttcgattatgttaataatacttggcttatgtgtcttatttataaccgttgtt 4620687  T
Q  228 attctgaatccagatagatatagtgatattcgtttatgttttcttaacataacatactagaaaaagcaca 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620686 attctgaatccagatagatatagtgatattcgtttatgttttcttaacataacatactagaaaaagcaca 4620617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 559 - 689
Target Start/End: Complemental strand, 1847030 - 1846900
Alignment:
Q  559 tggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaagaagcc 658  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||     
T  1847030 tggtcatgtcgactccgggaagtcaacgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaagct 1846931  T
Q  659 gctgagataaacatgtgttcattcaaatatg 689  Q
    ||||||||||||| | |||||||||| ||||    
T  1846930 gctgagataaacaggcgttcattcaagtatg 1846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 525 - 657
Target Start/End: Original strand, 4787123 - 4787255
Alignment:
Q  525 ataaaggaaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaa 624  Q
    |||||| ||||||| ||||||| |||||| |||||||||| | | |||| ||||||||||||||  ||| ||||||| |||||||||||||||| |||      
T  4787123 ataaagaaaaggttcgtattaacattgtggttattggtcaagccaactccgggaagtcaaccaccactgctcatttgctctacaagcttggaggcattgg 4787222  T
Q  625 aaaggacgtcattgagcgatttgagaaagaagc 657  Q
    |||||| ||||||||| || |||||||||||||    
T  4787223 aaaggatgtcattgagagacttgagaaagaagc 4787255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 519 - 653
Target Start/End: Complemental strand, 4298151 - 4298017
Alignment:
Q  519 taatggataaaggaaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggagg 618  Q
    ||||||||||   ||||| | ||||||| |||||| ||||||| |||| | |||| ||||||||||||||| ||| ||||||| ||||||| || |||||    
T  4298151 taatggataagaaaaaggctcgtattaacattgtggttattggccatgccaactccgggaagtcaaccactactgctcatttgctctacaaactcggagg 4298052  T
Q  619 tattaaaaaggacgtcattgagcgatttgagaaag 653  Q
     ||| ||||||| ||||||||| || |||||||||    
T  4298051 cattgaaaaggatgtcattgagagacttgagaaag 4298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 532 - 689
Target Start/End: Original strand, 40034320 - 40034477
Alignment:
Q  532 aaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggac 631  Q
    |||||||  |||||| || || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||     
T  40034320 aaaggttcatattaacatcgtatttattggtaatgtcgactctgggaagtcaaccactggtggtcatttgatctacaagcttggcggtattaaaaaggat 40034419  T
Q  632 gtcattgagcgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    |||||||||  ||||||||||||||| |||||||| |||| | | |||||||| ||||    
T  40034420 gtcattgagaaatttgagaaagaagctgctgagatgaacaagcgctcattcaagtatg 40034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 7890673 - 7890821
Alignment:
Q  541 tattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgag 640  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||| ||     
T  7890673 tattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgat 7890772  T
Q  641 cgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
     |||||||||||||||| |||||||| |||| |  ||||||||| ||||    
T  7890773 agatttgagaaagaagctgctgagatgaacaggcattcattcaagtatg 7890821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 532 - 683
Target Start/End: Complemental strand, 51292280 - 51292129
Alignment:
Q  532 aaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggac 631  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||| | ||| |     
T  51292280 aaaggttcgtattaacattgtgtttattggtcatgtcgactatggaaagtcaaatactgctggtcatttgatctacaagcttggaggtattgacaagaat 51292181  T
Q  632 gtcattgagcgatttgagaaagaagccgctgagataaacatgtgttcattca 683  Q
    | ||||||| || |||||||||||||  ||||||| |||||| |||||||||    
T  51292180 gacattgagagacttgagaaagaagctactgagatgaacatgcgttcattca 51292129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 549 - 671
Target Start/End: Original strand, 38137497 - 38137619
Alignment:
Q  549 ttgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttga 648  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| || ||||    
T  38137497 ttgtggttattggtcatgttgactctgggaagtcaactactgctggtcatttgatctacaaacttggaggtattgaaaaggatgtcattgagagacttga 38137596  T
Q  649 gaaagaagccgctgagataaaca 671  Q
    |||||||||  ||||||||||||    
T  38137597 gaaagaagctactgagataaaca 38137619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 552 - 671
Target Start/End: Original strand, 7888419 - 7888538
Alignment:
Q  552 tgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaa 651  Q
    |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||  | |||||||    
T  7888419 tgtttattggtcatgttgattccgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagaaacttgagaa 7888518  T
Q  652 agaagccgctgagataaaca 671  Q
    |||||| |||||||||||||    
T  7888519 agaagctgctgagataaaca 7888538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 519 - 689
Target Start/End: Complemental strand, 43046125 - 43045955
Alignment:
Q  519 taatggataaaggaaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggagg 618  Q
    |||||| ||||| |||||||   || || |||||| | ||||| ||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||    
T  43046125 taatgggtaaagaaaaggttcacatcaacattgtggtcattggccatgtcgactctgggaaatcaaccaccactggtcacttgatctacaagcttggagg 43046026  T
Q  619 tattaaaaaggacgtcattgagcgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    |||| | |||   ||||||||| | |||||||||||||| |||||||| |||| | |||||||||| ||||    
T  43046025 tattgacaagcgtgtcattgagaggtttgagaaagaagctgctgagatgaacaagcgttcattcaagtatg 43045955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 532 - 689
Target Start/End: Original strand, 45983332 - 45983489
Alignment:
Q  532 aaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggac 631  Q
    ||||||| ||||||| |||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||| |||||| ||||| | |||       
T  45983332 aaaggttcgtattaacattgtggttattggtcatgtggactccgggaagtcaaccactactggtcatttgatccacaaacttggatgtattcacaagagt 45983431  T
Q  632 gtcattgagcgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    ||||||||| |  ||||||||||||| ||| |||| |||| | |||||||||| ||||    
T  45983432 gtcattgagagtcttgagaaagaagctgctaagatgaacaagcgttcattcaagtatg 45983489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 557 - 689
Target Start/End: Complemental strand, 3301370 - 3301238
Alignment:
Q  557 attggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaagaag 656  Q
    ||||||||||||||||| ||||||||||||||  | ||||| |||||||||||||||||||||||| | |||   || |||||| | |||||||||||||    
T  3301370 attggtcatgtcgactccgggaagtcaaccaccaccggtcacttgatctacaagcttggaggtattgacaagcgtgtgattgagaggtttgagaaagaag 3301271  T
Q  657 ccgctgagataaacatgtgttcattcaaatatg 689  Q
    | |||||||| |||| | |||||||||| ||||    
T  3301270 ctgctgagatgaacaagcgttcattcaagtatg 3301238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 519 - 689
Target Start/End: Original strand, 45993099 - 45993269
Alignment:
Q  519 taatggataaaggaaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggagg 618  Q
    |||||||||| | |||||||  |||||  |||||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||| |||||| |    
T  45993099 taatggataaggaaaaggttcctattagcattgtggttattggtcatgtcgactccgggaagtcaaccactactggtcatttcatccacaaacttggatg 45993198  T
Q  619 tattaaaaaggacgtcattgagcgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    |||| | |||   ||||| ||| |  ||||||||||||| |||||||| | || | |||||||||| ||||    
T  45993199 tattcacaagagtgtcatcgagagtcttgagaaagaagctgctgagatgatcaagcgttcattcaagtatg 45993269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 548 - 689
Target Start/End: Complemental strand, 43084524 - 43084383
Alignment:
Q  548 attgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttg 647  Q
    |||||| | ||||| ||||| ||||||||||| ||||||||  ||||||| |||||||||||||||||||||||| | |||   ||||| ||| | ||||    
T  43084524 attgtggtcattggccatgttgactctgggaaatcaaccacaactggtcacttgatctacaagcttggaggtattgacaagcgtgtcatagagaggtttg 43084425  T
Q  648 agaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    |||||||||| |||||||| |||| | |||||||||| ||||    
T  43084424 agaaagaagctgctgagatgaacaagcgttcattcaagtatg 43084383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 557 - 689
Target Start/End: Original strand, 43066320 - 43066452
Alignment:
Q  557 attggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaagaag 656  Q
    ||||| |||||||||||||| |||||||||||  ||||||| || |||||||| |||||||||||| | |||   ||||||||| | |||||||||||||    
T  43066320 attggccatgtcgactctggcaagtcaaccaccactggtcacttaatctacaaacttggaggtattgacaagcgtgtcattgagaggtttgagaaagaag 43066419  T
Q  657 ccgctgagataaacatgtgttcattcaaatatg 689  Q
    | |||||||| |||| | |||||||||| ||||    
T  43066420 ctgctgagatgaacaagcgttcattcaagtatg 43066452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 689
Target Start/End: Complemental strand, 43045559 - 43045502
Alignment:
Q  632 gtcattgagcgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
    ||||||||| | |||||||||||||| |||||||| |||| | |||||||||| ||||    
T  43045559 gtcattgagaggtttgagaaagaagctgctgagatgaacaagcgttcattcaagtatg 43045502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 45983246 - 45983291
Alignment:
Q  453 atttattttactaatgtcctgttgttttctgtgttgaattggcaga 498  Q
    |||||||||||| ||||| ||||  |||||||||||||||||||||    
T  45983246 atttattttacttatgtcttgttactttctgtgttgaattggcaga 45983291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 548 - 689
Target Start/End: Complemental strand, 34691474 - 34691333
Alignment:
Q  548 attgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttg 647  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||   | |||||||  | |||    
T  34691474 attgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatttgatttacaagcttggaggtattgaaaagagtgccattgaggcacttg 34691375  T
Q  648 agaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
     ||||||||| |||||||| || | | |||||||||| ||||    
T  34691374 ggaaagaagctgctgagatgaagaagcgttcattcaagtatg 34691333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 548 - 689
Target Start/End: Complemental strand, 34713886 - 34713745
Alignment:
Q  548 attgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttg 647  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||   | |||||||  | |||    
T  34713886 attgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatttgatttacaagcttggaggtattgaaaagagtgccattgaggcacttg 34713787  T
Q  648 agaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
     ||||||||| |||||||| || | | |||||||||| ||||    
T  34713786 ggaaagaagctgctgagatgaagaagcgttcattcaagtatg 34713745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 548 - 689
Target Start/End: Complemental strand, 16232823 - 16232682
Alignment:
Q  548 attgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttg 647  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||| ||||||||| | |||||||||||||||||| |||||   | |||||||  | |||    
T  16232823 attgtctttattggtcatgtcaattctgggaagtcaactactgccggtcatttgctttacaagcttggaggtattcaaaagagtgccattgaggcacttg 16232724  T
Q  648 agaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
     ||||||||| |||||||| || ||| |||||||||| ||||    
T  16232723 ggaaagaagctgctgagatgaagatgcgttcattcaagtatg 16232682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 33861495 - 33861347
Alignment:
Q  541 tattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgag 640  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||  | ||||||||| || ||||||||||| ||||| | ||| | ||||||||     
T  33861495 tattaacattgtggttattggtcatgttgactctgggaagtcaaccacaaccggtcatttgctccacaagcttggatgtattgacaagcatgtcattgac 33861396  T
Q  641 cgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatg 689  Q
     |  ||||| ||||||| ||| ||||  ||| |||||||||||| ||||    
T  33861395 agtcttgaggaagaagctgctcagatcgacaagtgttcattcaagtatg 33861347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 33861603 - 33861558
Alignment:
Q  453 atttattttactaatgtcctgttgttttctgtgttgaattggcaga 498  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||    
T  33861603 atttattttactcatgtcttgttgttttctttgttgaattggcaga 33861558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 557 - 681
Target Start/End: Complemental strand, 4232107 - 4231983
Alignment:
Q  557 attggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaagaag 656  Q
    ||||| ||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||| | |||   || |||||| | |||||||||||||    
T  4232107 attggccatgtcgactctgggaagtcaactaccactggtcacttgatctacaagcttggaggtattgacaagcgtgtgattgagaggtttgagaaagaag 4232008  T
Q  657 ccgctgagataaacatgtgttcatt 681  Q
    | |||||||| |||| | |||||||    
T  4232007 ctgctgagatgaacaagcgttcatt 4231983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 616
Target Start/End: Original strand, 19964623 - 19964696
Alignment:
Q  543 ttaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttgga 616  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  19964623 ttaacattgtggttattggtcatgttgactctgggaagtcaaccactactggtcacttgatccacaagcttgga 19964696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 527 - 618
Target Start/End: Complemental strand, 16352298 - 16352207
Alignment:
Q  527 aaaggaaaggttggtattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggagg 618  Q
    |||| |||||||  |||||| |||||| |||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  16352298 aaagaaaaggttcatattaacattgtggttattggtcatgtcaactctgggaagtcaaccaccgccggtcatttgttctacaagcttggagg 16352207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 689
Target Start/End: Original strand, 7528735 - 7528867
Alignment:
Q  557 attggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaagaag 656  Q
    ||||| |||||||||||||| || ||||| ||  ||||||| |||||||||||||| ||||||||| | |||   || || ||| |||||||||| ||||    
T  7528735 attggacatgtcgactctggaaaatcaacaacaactggtcacttgatctacaagctaggaggtattgacaagcgtgtgatcgagagatttgagaaggaag 7528834  T
Q  657 ccgctgagataaacatgtgttcattcaaatatg 689  Q
    | |||||||| |||| | |||||||||| ||||    
T  7528835 ctgctgagatgaacaagcgttcattcaagtatg 7528867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 671
Target Start/End: Original strand, 7519364 - 7519478
Alignment:
Q  557 attggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggacgtcattgagcgatttgagaaagaag 656  Q
    ||||| |||||||||||||| || ||||| ||  ||||||| |||||||||||||| ||||||||| | |||   || || ||| |||| ||||| ||||    
T  7519364 attggacatgtcgactctggaaaatcaacaacaactggtcacttgatctacaagctaggaggtattgacaagcgtgtgatcgagagattcgagaaggaag 7519463  T
Q  657 ccgctgagataaaca 671  Q
    | |||||||| ||||    
T  7519464 ctgctgagatgaaca 7519478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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