View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8011_low_2 (Length: 503)

Name: NF8011_low_2
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8011_low_2
NF8011_low_2
[»] chr6 (2 HSPs)
chr6 (9-377)||(17219949-17220313)
chr6 (427-475)||(17220447-17220495)
[»] chr4 (3 HSPs)
chr4 (430-474)||(21790136-21790180)
chr4 (427-474)||(31089913-31089960)
chr4 (429-483)||(49229223-49229277)
[»] chr1 (2 HSPs)
chr1 (431-474)||(15057688-15057731)
chr1 (431-474)||(39617339-39617382)
[»] chr3 (1 HSPs)
chr3 (431-473)||(27161512-27161554)
[»] chr7 (2 HSPs)
chr7 (431-474)||(47708432-47708475)
chr7 (428-474)||(3105974-3106020)
[»] chr5 (1 HSPs)
chr5 (431-474)||(42910778-42910821)
[»] chr2 (1 HSPs)
chr2 (431-474)||(44587709-44587752)
[»] chr8 (1 HSPs)
chr8 (431-471)||(12736386-12736426)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 17219949 - 17220313
Alignment:
Q  9 agcagagagaatagaatttgataaataatatattatggaaaaaaggtttgatgtagaaaatcccaaggagaacccatccttcctaccttccatccatcca 108  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  17219949 agcatagagaatagaatttgataaataatatatcatggaaaaaaggtttgatgtagaaaatcccaaggagaacccatccttcctaccttccatccatc-- 17220046  T
Q  109 tcttggttctaccaaacgaaaattaataataaataaagcatattagattccaattaaagttgctaagttattatattttgnnnnnnnaatgtgctagttg 208  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||       |||||||||||||    
T  17220047 --ttggttctaccaaacgaaaattaataataaataaagcatattagattccaattaaagttgctaagttat---attttgtttttttaatgtgctagttg 17220141  T
Q  209 ttatattcttcaataaacaaaaaatgtactagttgat--atattaggatgcatctgctaggttacatttctgtgttctgaatgtac---ctagatacttc 303  Q
    |||||||||||||   | ||||||||||||||||  |   ||||||||||||||||||| ||||||||||||||||||||||||||   ||| |||| ||    
T  17220142 ttatattcttcaa-ctataaaaaatgtactagttagttgctattaggatgcatctgctaagttacatttctgtgttctgaatgtacttactatatacctc 17220240  T
Q  304 gacaaacnnnnnnntgtactagattctattaggatgcagcttacatgttgtaaggttgtgaattcaatttttat 377  Q
     ||||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17220241 aacaaac-aaaaaatgtactagattctattaggatgcagcttatatgttgtaaggttgtgaattcaatttttat 17220313  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 17220447 - 17220495
Alignment:
Q  427 ctattttttaggtttattgaatgagtgatgtatgtggtcattaatatat 475  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  17220447 ctattttttaggtttcttgaatgagttatgtatgtggtcattaatatat 17220495  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 21790136 - 21790180
Alignment:
Q  430 ttttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  21790136 ttttttaagtttattgaatgagtgatgaatgtggtcattaatata 21790180  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 31089913 - 31089960
Alignment:
Q  427 ctattttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||    
T  31089913 ctattttttaggttcattgaatgagtgatgtatgtgaccattaatata 31089960  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 49229277 - 49229223
Alignment:
Q  429 attttttaggtttattgaatgagtgatgtatgtggtcattaatatatatcacgta 483  Q
    |||||||||||||||||||||| |||| |||||   |||||||||||| ||||||    
T  49229277 attttttaggtttattgaatgaatgatatatgtaaacattaatatataccacgta 49229223  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 474
Target Start/End: Original strand, 15057688 - 15057731
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  15057688 tttttagattcattgaatgagtgatgtatgtggtcattaatata 15057731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 474
Target Start/End: Original strand, 39617339 - 39617382
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  39617339 tttttagatttattgaatgagtgatgtatgtgatcattaatata 39617382  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 473
Target Start/End: Complemental strand, 27161554 - 27161512
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaatat 473  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  27161554 tttttaggttaattgaatgagtgatgaatgtggtcattaatat 27161512  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Original strand, 47708432 - 47708475
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||    
T  47708432 tttttaagttcattgaatgagtgatgtatgttgtcattaatata 47708475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 3105974 - 3106020
Alignment:
Q  428 tattttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    |||||||||||||||||||||||||| ||||| ||  ||||||||||    
T  3105974 tattttttaggtttattgaatgagtgttgtatatgaccattaatata 3106020  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 42910821 - 42910778
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    |||||||||||||||||||||||||| |||||| |||| |||||    
T  42910821 tttttaggtttattgaatgagtgatgaatgtggccatttatata 42910778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 44587752 - 44587709
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaatata 474  Q
    ||||||| || |||||||||||||||||||||||||| ||||||    
T  44587752 tttttagattcattgaatgagtgatgtatgtggtcatcaatata 44587709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 12736386 - 12736426
Alignment:
Q  431 tttttaggtttattgaatgagtgatgtatgtggtcattaat 471  Q
    |||||||||| ||||||||| ||||||||||| ||||||||    
T  12736386 tttttaggttcattgaatgattgatgtatgtgatcattaat 12736426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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