View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8011_low_5 (Length: 379)

Name: NF8011_low_5
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8011_low_5
NF8011_low_5
[»] chr1 (3 HSPs)
chr1 (17-379)||(51318884-51319246)
chr1 (90-338)||(51342776-51343024)
chr1 (215-313)||(51312728-51312826)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 51318884 - 51319246
Alignment:
Q  17 aaaccatgactcatcactgtgaattagaagatcttgatttatatgaggtgatccaaatcttcctttagaaacaaactttccagccaagtgaagaacattg 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51318884 aaaccatgactcatcactgtgaattagaagatcttgatgtatatgaggtgatccaaatcttcctttagaaacaaactttccagccaagtgaagaacattg 51318983  T
Q  117 tttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaagttcttgtcggtgtaaaatcgcaacgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51318984 tttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaagttcttgtcggtgtaaaatcgcaacgt 51319083  T
Q  217 gaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtgctgcatc 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51319084 gaagtaaactttgcccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaactgtgctgcatc 51319183  T
Q  317 aaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccattctctc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51319184 aaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccattctctc 51319246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 90 - 338
Target Start/End: Original strand, 51342776 - 51343024
Alignment:
Q  90 aactttccagccaagtgaagaacattgtttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaa 189  Q
    |||||||||||||||||||||| ||||||||||||  |||||| |  |||||| |||||||| ||||||||||||||  | ||||||| | | || |||     
T  51342776 aactttccagccaagtgaagaatattgtttccctcgagatcaatatgttgcactaaaacattcttgtatgaaccctttgtgaatattaaacgatatacac 51342875  T
Q  190 gttcttgtcggtgtaaaatcgcaacgtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaat 289  Q
     | |||  |  | ||| || |||| ||||||||  ||||| ||||  |||||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  51342876 ttcctttcctatataagatagcaatgtgaagtatgctttgcccttttgaattgacttccatgaatagattcggattgtagttgaagataaaatctaaaat 51342975  T
Q  290 taagatgttgcctaattgtgctgcatcaaacattgcttttgaagttttt 338  Q
    ||  ||||| ||| ||| |||||| ||||||||||||||||||||||||    
T  51342976 tataatgtttcctgattttgctgcctcaaacattgcttttgaagttttt 51343024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 51312728 - 51312826
Alignment:
Q  215 gtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtgctgc 313  Q
    |||||||||  |||| |||| || ||||||||||||||| | ||| || |||||||| |||||||||| |||||  | |||||| ||| ||| ||||||    
T  51312728 gtgaagtaagttttgcccttgaggattgacttccataaacaaattggggttatagttaaaaataaattttaaaaccatgatgtttcctgattttgctgc 51312826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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