View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8011_low_6 (Length: 325)
Name: NF8011_low_6
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8011_low_6 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 22079665 - 22079972
Alignment:
| Q |
1 |
tcaaagttttgcagagtgaaggtagtgttctcagcaattatacccttaaactgatctttgagttcagatggcagaattatttgaatacgatcaccctgat |
100 |
Q |
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||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
22079665 |
tcaaagttttgcagagtaaaggtagtgttctcaacaattctacccttaaactgatctttgagttcaaatggcagaattatttgaatacgatcaacctgat |
22079764 |
T |
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| Q |
101 |
ggaaattagaagtgaattatacatactttttaaaacattagtttctattaaaattaattatagatcagtgatgttgtaaccatcattgatatgtgctttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22079765 |
ggaaattagaagtgaattatacatactttttaaaacattagtttctattaaaattaattatagatgagtgatgttgtaaccatcattgatatgtgctttg |
22079864 |
T |
|
| Q |
201 |
aaacccacctctttgtcacacaacaccatctcaatatgctgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22079865 |
aaacccacctctttgtcacacaacaccatctcaatatgttgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccaca |
22079964 |
T |
|
| Q |
301 |
gagatttg |
308 |
Q |
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|||||||| |
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| T |
22079965 |
gagatttg |
22079972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 152 - 298
Target Start/End: Complemental strand, 1522736 - 1522591
Alignment:
| Q |
152 |
aattaattatagatcagtgatgttgtaaccatcattgatatgtgctttgaaacccacctctttgtcacacaacaccatctcaatatgctgtttgttcttt |
251 |
Q |
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|||||| ||||||| |||||||||||||||| ||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1522736 |
aattaaatatagattagtgatgttgtaacca-catagttgagtgctttcaaacccacctctttgtcacacaacaccatctcaatatgctgtttcttcttt |
1522638 |
T |
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| Q |
252 |
gaatttgcaacagtccacatgtcaacaactcgaacagcaattttcca |
298 |
Q |
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| T |
1522637 |
gaatttgcaacagtccacatgtcaacaactcgaacaacaattttcca |
1522591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 23700170 - 23700271
Alignment:
| Q |
207 |
acctctttgtcacacaacaccatctcaatatgctgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagatt |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
23700170 |
acctctttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaacagtccacaaatcaacaactcgaacatcaattttccacagagatt |
23700269 |
T |
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| Q |
307 |
tg |
308 |
Q |
| |
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|| |
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| T |
23700270 |
tg |
23700271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23699962 - 23700060
Alignment:
| Q |
1 |
tcaaagttttgcagagtgaaggtagtgttctcagcaattatacccttaaactgatctttgagttcagatggcagaattatttgaatacgatcaccctga |
99 |
Q |
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||||||| |||||||||||| |||| ||||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||| |||||| |||||||||||| |
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| T |
23699962 |
tcaaagtcttgcagagtgaaagtagcgttctcagcaattctactcttaaacttatctttgaattcagttggcaaaattacttgaattcgatcaccctga |
23700060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 125005 - 125106
Alignment:
| Q |
206 |
cacctctttgtcacacaacaccatctcaatatgctgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagat |
305 |
Q |
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|||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
125005 |
cacctctttgtcgcaccccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
125104 |
T |
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| Q |
306 |
tt |
307 |
Q |
| |
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|| |
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| T |
125105 |
tt |
125106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 124799 - 124897
Alignment:
| Q |
1 |
tcaaagttttgcagagtgaaggtagtgttctcagcaattatacccttaaactgatctttgagttcagatggcagaattatttgaatacgatcaccctga |
99 |
Q |
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||||||||||||||||| || |||||||||||||||| | ||| ||||||||||||||||| |||| ||||| ||| | ||||||||||||||||||| |
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| T |
124799 |
tcaaagttttgcagagtaaaagtagtgttctcagcaactctactcttaaactgatctttgaattcatttggcaaaatgacttgaatacgatcaccctga |
124897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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