View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8011_low_7 (Length: 301)
Name: NF8011_low_7
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8011_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 35647871 - 35648144
Alignment:
| Q |
16 |
gacatcaagtgtcattgtatcatttagattcgaacccatcatcagcaaagtgtaatattaaatctataaaatatgtaatgaatnnnnnnn--gtatatgc |
113 |
Q |
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| T |
35647871 |
gacatcaagtgtcattgtatcatttagattcgaaaccatcatcagcaaagtgtaatattaaatctataaaatatttaatgaataaaaaaaaagtatatgc |
35647970 |
T |
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| Q |
114 |
aaagcaatgtgtttataaacacatttacatataatatagtttgagtaaaagaacaaagctcatgttaatcttccatagatttgaagaattccaacttctt |
213 |
Q |
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| T |
35647971 |
aaagcaatgtgtttataaacacatttacatataatatagtttgagtaaaagaacaaagctcatgttaatcttccatagatttgaagaattccaacttctt |
35648070 |
T |
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| Q |
214 |
gatcaggaatgacttggaaaaacattggacgaagcaatcatgctgaattttttagtgtattatacaatttattg |
287 |
Q |
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| T |
35648071 |
gatcaggaatgacttggaaaaacattggacgaagcaatcatgctgaattttttagtgtattatacaatttattg |
35648144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 287
Target Start/End: Original strand, 35645149 - 35645303
Alignment:
| Q |
134 |
acatttacatataatatagtttgagtaaaagaacaaagctcatgttaatcttccatagatttgaagaattccaacttc--ttgatcaggaatgacttgga |
231 |
Q |
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| T |
35645149 |
acatttacatatagtatagttagaatcaaagaacaaagttcaggttaatattccaga-atttgaagatttccaacttcactagatcaggaatgacttgga |
35645247 |
T |
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| Q |
232 |
aaaacattggacgaagcaatcatgctgaattttttagtgtattatacaatttattg |
287 |
Q |
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| T |
35645248 |
gaaatattggatgaagcaatcatgctgaattttttattgtattatataatttattg |
35645303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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