View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8011_low_9 (Length: 285)
Name: NF8011_low_9
Description: NF8011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8011_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 1376576 - 1376322
Alignment:
| Q |
16 |
ggaatgagttcaatgagtttcaaggttaaagaattcttcaacggtccaaaccaagtcgataagctcgttgaagatgctacttccgaagcacatgaagagc |
115 |
Q |
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| T |
1376576 |
ggaatgagttcaatgagtttcaaggttaaagaattcttcaacggtccaaaccaagtcgataagctcgtcgaagatgctacttccgaagcacatgaagagc |
1376477 |
T |
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| Q |
116 |
ctgattgggctatgaatctcgatctatgtgatttaatcaatactgaaaaagttaacagtgttgaattgatccgtgctattaagaaacggatcatgattaa |
215 |
Q |
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| T |
1376476 |
ctgattgggctatgaatcttgatctatgtgatttaatcaatactgaaaaagttaacagtgttgaattgatccgtgctattaagaaacggatcatgattaa |
1376377 |
T |
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| Q |
216 |
aattcctagggttcagtatttggctttggttttgcttgaaactgttgttaagaat |
270 |
Q |
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| T |
1376376 |
aattcctagggttcagtatttggctttggttttgcttgaaactgttgttaagaat |
1376322 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 29942569 - 29942501
Alignment:
| Q |
187 |
cgtgctattaagaaacggatcatgattaaaattcctagggttcagtatttggctttggttttgcttgaa |
255 |
Q |
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| T |
29942569 |
cgtgccatcaagaaaaggatcatgatgaaaagtgttagaggtcagtatttggctttggttttgcttgaa |
29942501 |
T |
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