View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8012_high_1 (Length: 511)
Name: NF8012_high_1
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 13765751 - 13766225
Alignment:
| Q |
18 |
taagggaagggatcttgttgtggtggaggtagctaataagaaccagtgtttggcgtatttgtggactattttgaagatctaagactcgtagatgttccaa |
117 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||| ||||||||||||||||||| ||||||| ||| |||||| |||| |||||||| ||||||||||| |
|
|
| T |
13765751 |
taaggggagggatcttgtttttgtggaggtagctgataagaaccagtgtttggcctatttgtaaactgttttgacgatccaagactcgcagatgttccaa |
13765850 |
T |
|
| Q |
118 |
tggtcaagagcaaaatggttgagagagagaaggacataatacaacttatttccacgcctgtgtgaagaatagaggtatgaggaattccatctcggcacct |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13765851 |
tggtcaagagcaaagtggttgagagagagaaggacataatacaacttatttcctcgcctgtgtgaagaatagaggtatgaggaattccatctcggctcct |
13765950 |
T |
|
| Q |
218 |
agggtggaaaggtggatggaggatgttgcaaagatcaaacaagcgattgtgaatttctttacgcatcatttctcagacccatagacctatagaccgacca |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13765951 |
agggtggaaaggtggatggatgatgttgcaaagaacaaacaagcgattgtgaatttctttacgcatcatttctcagacccatagacctatagaccgacca |
13766050 |
T |
|
| Q |
318 |
tggtcgatattgatttcattcatatttctaatttggataatgtcctgttgttagctctagtcttggtttcaaaaatggaattggtggtttctagtgtgga |
417 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13766051 |
tgggcgatattgatttctttcatatttctaatttggataatgttctgttgtcagctcaattcttggtttcaaaaatggaattggtggtttctagtctgga |
13766150 |
T |
|
| Q |
418 |
tggtaacgagatccctataccggacggatttaatctcaacttctttacacggttgcgaaatatgttgaaagctga |
492 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13766151 |
tggtaacgagagccctaggccggacggatttaatctcaacttctttatacggttgcgaaatatgttgaaagctga |
13766225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University