View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_high_2 (Length: 472)
Name: NF8012_high_2
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 5983469 - 5983922
Alignment:
| Q |
1 |
tgcatgcataactaaaagagaaattgattggacaagcatgccaagattcgaacgaaatggattctcggggatcattcaaagagaaactcattcaagagaa |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5983469 |
tgcatccataactaaaagagaaattgattggacaagcatgccaagatttgaacgaaatggattctcgaggatcattcaaagagaaactcattcaagagaa |
5983568 |
T |
|
| Q |
101 |
ataaaagaggcatgctagccgagggacaagtcttcaccttgtatccattatagatatggagaattttgatgatgatatatcagccaatcaaacgaaagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5983569 |
ataaaagaggcatgctagccgagggacaagtcttcaccttgtatccattatagatatggagaattttgatgatgatatatcagccgatcaaacgaaagat |
5983668 |
T |
|
| Q |
201 |
gttaaaataccaatcggtgaaggcgacaatttcatcagtttccgaataacactatctcgaagttcagaagattgtaccagttaagttgaagtatttggtt |
300 |
Q |
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| T |
5983669 |
tttaaaataccaatcggtgaaggcgacaatttcatcggtgtccgaataacactatctcgaagttcagaagattgtaccagttaagttgaagtatttggtt |
5983768 |
T |
|
| Q |
301 |
cacttttctttaaccaatggnnnnnnnggttagaaatggagacattaattcataaccatgctaaacaatgccaaaccatctattgcgagggttgtaaacc |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5983769 |
cacttttctttaaccaatgg-ttttttggttagaaatggagacattaattcataaccatgctaaacaatgccaaaccatctattgcgagggttgtaaacc |
5983867 |
T |
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| Q |
401 |
tttggttttgttataacgacaactaggttttagaccatagatcaatggaggttag |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5983868 |
tttggttttgttataacgacaactaggttttagaccatagatcaatggaggttag |
5983922 |
T |
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