View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8012_high_3 (Length: 469)

Name: NF8012_high_3
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8012_high_3
NF8012_high_3
[»] chr6 (12 HSPs)
chr6 (115-256)||(21266793-21266934)
chr6 (1-119)||(21266958-21267075)
chr6 (115-238)||(21136479-21136601)
chr6 (1-120)||(21136624-21136740)
chr6 (257-300)||(21265590-21265633)
chr6 (5-59)||(33714812-33714866)
chr6 (7-85)||(21311248-21311326)
chr6 (5-86)||(33701547-33701627)
chr6 (115-238)||(21311055-21311181)
chr6 (45-81)||(21299083-21299119)
chr6 (7-43)||(21217204-21217240)
chr6 (257-297)||(21266666-21266706)
[»] scaffold0076 (2 HSPs)
scaffold0076 (118-202)||(12569-12653)
scaffold0076 (6-56)||(12762-12812)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 21266934 - 21266793
Alignment:
Q  115 aacagtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatagagcacattgtgt 214  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| |||    
T  21266934 aacagtcccacatcggtggtacataaacaaccaagaggaggatttacttattaaagacccttgttttgtaatagtgtagacccaatagtgcacattttgt 21266835  T
Q  215 tctccacttagtttataaaagtggaatgaaaataattttggt 256  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  21266834 tctccactttgtttataaaagtggtatgaaaataattttggt 21266793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21267075 - 21266958
Alignment:
Q  1 catactaatcgaaaatttaacaaattcaaagttctaaagaataaaaattctcaacaccatgacatatcaaacaactagaaacatgaacaaagaggaggaa 100  Q
    |||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  21267075 catattaatccaaaagttaacaaattcaaagttctaaagaatataaattctcaacaccatgacatatcaaacaactagaaacatgagcaaagaggaagaa 21266976  T
Q  101 gtagcaactagcaaaacag 119  Q
     || |||||||||||||||    
T  21266975 -taacaactagcaaaacag 21266958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 21136601 - 21136479
Alignment:
Q  115 aacagtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatagagcacattgtgt 214  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||  |||||||||| ||| || || ||||||||| ||||||| |||    
T  21136601 aacagtcccacatcggtggtgcttaaacaaccaagaggaggatttacttataaaag-tccttgtgctgcaattgtttaaacccaatagtgcacattatgt 21136503  T
Q  215 tctccacttagtttataaaagtgg 238  Q
    ||||||||||||||||| ||||||    
T  21136502 tctccacttagtttatacaagtgg 21136479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 21136740 - 21136624
Alignment:
Q  1 catactaatcgaaaatttaacaaattcaaagttctaaagaataaaaattctcaacaccatgacatatcaaacaactagaaacatgaacaaagaggaggaa 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||||||| |||||||||| ||||   ||||||    
T  21136740 catattaatccaaaatttaacaaattcaaagttctgaagaatataaattctcaacaccaatacatatcaaacaaccagaaacatgagcaaa---gaggaa 21136644  T
Q  101 gtagcaactagcaaaacagt 120  Q
    ||| ||||||||||||||||    
T  21136643 gtaacaactagcaaaacagt 21136624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 21265633 - 21265590
Alignment:
Q  257 aaacaaatgaagtttccaaatattttctaaatggaatttcaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21265633 aaacaaatgaagtttccaaatattttctaaatggaatttcaaat 21265590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 33714866 - 33714812
Alignment:
Q  5 ctaatcgaaaatttaacaaattcaaagttctaaagaataaaaattctcaacacca 59  Q
    |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  33714866 ctaatctaaaatttaacaaattcaaagttctaaagaatagaaaatctcaacacca 33714812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 21311326 - 21311248
Alignment:
Q  7 aatcgaaaatttaacaaattcaaagttctaaagaataaaaattctcaacaccatgacatatcaaacaactagaaacatg 85  Q
    |||| ||||||||| || ||||||||||||||||||| || | |||||||||  |||| |||||||||||| |||||||    
T  21311326 aatccaaaatttaaaaagttcaaagttctaaagaatagaattgctcaacaccgagacacatcaaacaactacaaacatg 21311248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 33701627 - 33701547
Alignment:
Q  5 ctaatcgaaaatttaacaaattcaaagttctaaagaataaaaattctcaacaccatgacatatcaaacaactagaaacatga 86  Q
    |||||| ||||||||||||  ||||| ||||| |||||| ||||||| ||||||| ||||||| |||| |||||||||||||    
T  33701627 ctaatccaaaatttaacaagatcaaaattctatagaatagaaattctaaacaccaagacatataaaac-actagaaacatga 33701547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 21311181 - 21311055
Alignment:
Q  115 aacagtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatagagcacattgtgt 214  Q
    |||||||||| || | |||| | ||| |||| |||| || || |||||||| |||| |||||||||| ||| ||| |||||||||||  ||||||||||     
T  21311181 aacagtcccatattgatggtacttaaccaacaaagaagaagacttacttataaaaggcccttgtgctctaacagtttagacccaataatgcacattgtgc 21311082  T
Q  215 tc---tccacttagtttataaaagtgg 238  Q
    |    ||||||||||||||||||||||    
T  21311081 tgctgtccacttagtttataaaagtgg 21311055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 21299119 - 21299083
Alignment:
Q  45 aaattctcaacaccatgacatatcaaacaactagaaa 81  Q
    ||||||||||||||| |||||||||||||||||||||    
T  21299119 aaattctcaacaccaagacatatcaaacaactagaaa 21299083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 21217240 - 21217204
Alignment:
Q  7 aatcgaaaatttaacaaattcaaagttctaaagaata 43  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21217240 aatccaaaatttaacaagttcaaagttctaaagaata 21217204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 21266706 - 21266666
Alignment:
Q  257 aaacaaatgaagtttccaaatattttctaaatggaatttca 297  Q
    ||||||| ||||||| |||||| ||||||||||||||||||    
T  21266706 aaacaaacgaagttttcaaataatttctaaatggaatttca 21266666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 12653 - 12569
Alignment:
Q  118 agtcccacatcggtggtgcataaacaactaagaggaggatttacttattaaagacccttgtgctgtaatagtgtagacccaatag 202  Q
    |||||||||| | |||||| |||||||  ||||||| ||||||||||| ||||||||||||||| ||||||| ||||| ||||||    
T  12653 agtcccacatggatggtgcttaaacaatcaagaggaagatttacttataaaagacccttgtgctctaatagtttagactcaatag 12569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 12812 - 12762
Alignment:
Q  6 taatcgaaaatttaacaaattcaaagttctaaagaataaaaattctcaaca 56  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  12812 taatccaaaatttaacaagttcaaagttctaaagaatacaaattctcaaca 12762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University