View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_high_6 (Length: 311)
Name: NF8012_high_6
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 29487121 - 29487404
Alignment:
| Q |
4 |
gtagtatcatagagagggtcaaggaattaaaataagaaggataatatgttcatttattatatgtcctcaaataacaatagattaagaaaaacataatctg |
103 |
Q |
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| T |
29487121 |
gtagtattatagagagggtgaaggaattaaaataagaaggataatatgttcatttattatatgtcctcaaataacaatatattaagaaaaacatcatcag |
29487220 |
T |
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| Q |
104 |
caaataagcgagcatgtgctgcaaccttggtgtgagtcatgcaatcaaagcttacacatggggtgctataccaattgagagtttggcgtgttaatgacta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29487221 |
caaataagcgagcatgtgctgcaaccttggtgtgaggcatgcaatcaaagcttacacatggggtgctataccaattgagagtttggcgtgttaatgacta |
29487320 |
T |
|
| Q |
204 |
tgagttattttcctaaattgccactttcataaataagattaattaactttctacactattagtatacaaattttggtcggtctgtctag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
29487321 |
tgagttattttcctaaattgccactttcataaataagattaattaacttt-----ctattagtatacaaagtttggtcggtctgtctag |
29487404 |
T |
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