View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_high_8 (Length: 276)
Name: NF8012_high_8
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 17434162 - 17434420
Alignment:
| Q |
4 |
attccaatcatcaacaataagtttagaaatttcaaccggcgaagtttggctttgagttccttcaattgattattcatcttgatgaaatcaacttcaaggc |
103 |
Q |
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| T |
17434162 |
attccaatcatcaacaataagtttagaaatttcaaccggcgaagttttgctttgagttccttcaattgattattcatcttgatgaaatcaacttcaaggc |
17434261 |
T |
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| Q |
104 |
ttcttcgacaaatgtctgtaccaactgatacattttgcacaaaaggtccttcaggaccatctgaactccatgctgccatttcttgattgatcaaacccta |
203 |
Q |
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| T |
17434262 |
ttcttcgacaaatgtctgtaccaactgatacattttgcacaaaaggtccttcaggaccatctgaactccatgctgccatttcttgattgatcaaacccta |
17434361 |
T |
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| Q |
204 |
aatnnnnnnnnnnnnnnnngatcaaatttcaaggaaatgaaagctgtgtttgggaaatg |
262 |
Q |
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| T |
17434362 |
aataaaaaaataaaaaaaagatcaaatttcaaggaaatgaaagctgtgtttgggaaatg |
17434420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 17456353 - 17456486
Alignment:
| Q |
70 |
tgattattcatcttgatgaaatcaacttcaaggcttcttcgacaaatgtctgtaccaactgatacattttgcacaaaaggtccttcaggaccatctgaac |
169 |
Q |
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| T |
17456353 |
tgatttttcatcttgatcagatcaacctcaaggcttctttcccaaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagc |
17456452 |
T |
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| Q |
170 |
tccatgctgccatttcttgattgatcaaacccta |
203 |
Q |
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| T |
17456453 |
tccataccgccattttttaattgatcaaacccta |
17456486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 17463695 - 17463730
Alignment:
| Q |
149 |
gtccttcaggaccatctgaactccatgctgccattt |
184 |
Q |
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| T |
17463695 |
gtccttcaggaccatctgagctccatgctgccattt |
17463730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 774765 - 774730
Alignment:
| Q |
149 |
gtccttcaggaccatctgaactccatgctgccattt |
184 |
Q |
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| T |
774765 |
gtccttcaggaccatctgagctccatgctgccattt |
774730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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