View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8012_low_13 (Length: 241)
Name: NF8012_low_13
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29935074 - 29935296
Alignment:
| Q |
1 |
attttatgtagcagtagatattccacataccttgaaatacaaatcagagagcactcttagaaacttgacagatctgaaagcaaacttgtccccaaatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29935074 |
attttatgtagcagtagatattccacataccttgaaatacaaatcagagagcactcttagaaacttgacagatctgaaagcaaacttgtccccaaatgtt |
29935173 |
T |
|
| Q |
101 |
ttgggtacatgatgcttggtcacatctattgacacatctgaactgtaactttcccacggctgcgaacaaagatcgtatgagaaatcatcgaaatacaaca |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
29935174 |
tttggtacatgatgcttggtcacatctattgacacatctgaactgtaactttcccacggctgcgaaaaaagatcgtatgagaaatcatccaaatacaaca |
29935273 |
T |
|
| Q |
201 |
gcatgcaagatcaagtaactcat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
29935274 |
gcatgcaagatcaagtaactcat |
29935296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 29932321 - 29932481
Alignment:
| Q |
4 |
ttatgtagcagtagatattcc-acataccttgaaatacaaatcagagagcactcttagaaacttgacagatctgaaagcaaacttgtccccaaatgtttt |
102 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932321 |
ttatgtagcagtagataagcccacaaaccttgaaatacaaatcagagagaacccttagaaacttgacagatctgaaagcaaacttgtccccaaatgtttt |
29932420 |
T |
|
| Q |
103 |
gggtacatgatgcttggtcacatctattgacacatctgaactgtaactttcccacggctgc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
29932421 |
tggtacatgatgcttggtcacatctattgacacatctgagctgtaactttcccatggctgc |
29932481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University