View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_low_4 (Length: 455)
Name: NF8012_low_4
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 20636809 - 20637236
Alignment:
| Q |
10 |
aagaatatgttggaatcgatgtatcctctagaaattggttgaaaattatgccatcaaaatggaggagtggatcattgatttaagtgataatacgacatga |
109 |
Q |
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| T |
20636809 |
aagaatatgttggaatcgatgtatcctctagaaattggttgaaaattgtgccatcaaaatggaggagtggatcattgattaaagtgataatacgacatga |
20636908 |
T |
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| Q |
110 |
cttctcaagaaggacattgactgttttgacgactgacacccacaatattaacgaattgtatcgagtcattaatttgaatgatgttctcccgcagacggta |
209 |
Q |
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| T |
20636909 |
cttctcaagaaggacattgactgttgtgacgactgacacccacgatgttaacgaattatatcgagtcattaatttgaatgatattctcccgcagacggta |
20637008 |
T |
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| Q |
210 |
aaaattggtatatctacagcacaaatggaaggtcgtcaaacacacgacattcatatccattcatggagtttccattcagacttcacatcatctacattct |
309 |
Q |
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| T |
20637009 |
aaaattggtatatctacagcacaaatggaaggtcgtcaaacacacgacattcatatccattcatggagtttccattcagacttcacatcatctacattct |
20637108 |
T |
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| Q |
310 |
acaagcagcatggcccgatgcatcaacattgaatgatattgcaatctatgcattattattttttatctattttatgcatgaatggttgttatgataactt |
409 |
Q |
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| T |
20637109 |
acaagcagcatggcccgatgcatcaacattgaatgatattgcaatctatgcattattattttttatctattttatgcatgaatggttgttatgataactt |
20637208 |
T |
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| Q |
410 |
gtacgtctaaatataaggactatatgct |
437 |
Q |
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| T |
20637209 |
gtacgtctaaatataaggactatatgct |
20637236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 27 - 412
Target Start/End: Original strand, 20630786 - 20631157
Alignment:
| Q |
27 |
gatgtatcctctagaaattggttgaaaattatgccatcaaaatggaggagtggatcattgatttaagtgataatacgacatgacttctcaagaaggacat |
126 |
Q |
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| T |
20630786 |
gatgtatactctagaaataggttgaaaattgtaccatcaacacggaggagtgaatcattgattgaagtggtgatacgatatgactcctcgagtaagacat |
20630885 |
T |
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| Q |
127 |
tgactgttttgacgactgacacccacaatattaacgaattgtatcgagtcattaatttgaatgatgttctcccgcagacggtaaaaattggtatatctac |
226 |
Q |
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| T |
20630886 |
tgactgttatgacatctgacacccacgagtttaccgaatttcatcgagtcattaatttgaaagatgcactcccggggatggtaaaagttggtctatctac |
20630985 |
T |
|
| Q |
227 |
agcacaaatggaaggtcgtcaaacacacgacattcatatccattcatggagtttccattcagacttcacatcatctacattctacaagcagcatggcccg |
326 |
Q |
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| T |
20630986 |
aggacagatggaaggacgtgaaacacacgacattcatatccattcatggagtttccattcacacttcatatcatctgca----------agcatggcccg |
20631075 |
T |
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| Q |
327 |
atgcatcaacattgaatgatattgcaatctatgcattattattttttatctattttatgcatgaatggttgttatgataacttgta |
412 |
Q |
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| T |
20631076 |
aggcatcaacgt----tgatactgcaagctatgcattattattttttatatattttatgcatgattggttgttatgataacttgta |
20631157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 262 - 434
Target Start/End: Original strand, 20611674 - 20611840
Alignment:
| Q |
262 |
atatccattcatggagtttccattcagacttcacatcatctacattctacaagcagcatggcccgatgcatcaacattgaatgatattgcaatctatgca |
361 |
Q |
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| T |
20611674 |
atatcgattcatggagtttccattcacacttcacaacatctaca-------accagcatggcccgatgcatcaacattga----tattgcaagctatgca |
20611762 |
T |
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| Q |
362 |
ttattattttttatctattttatgcatgaatggttgttatgataacttg-----tacgtctaaatataaggactatat |
434 |
Q |
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| T |
20611763 |
ttattattttttatctatattatgcatgaatggttgttatgataacttgtataatatgtctaaatataaggactatat |
20611840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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