View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_low_5 (Length: 445)
Name: NF8012_low_5
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 19203362 - 19202952
Alignment:
| Q |
19 |
gttgttacaatatttaccatgataatggtggcaacaagattgaaaaagctagtttttcaaggctagtttgcaataagttgaatattgaatatgaaaactt |
118 |
Q |
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| T |
19203362 |
gttgttacaatatttaccatgataatggtggcaacaagattggaaaagctagtttttcaaggctagtttgcaataagttgaatattgaatatgaa----- |
19203268 |
T |
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| Q |
119 |
ttgagaatccatgtttgatcaacaagaatggaatctctccattgaaaatctcatgttttctctacatgaagtaaattttagttcaatagatatatttt-- |
216 |
Q |
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| T |
19203267 |
-------tccatgtttgatcaacaagaatggaatctctccattgaaaatctcatgttttctctacatgaagtaaattttagttcaatagatatatttttg |
19203175 |
T |
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| Q |
217 |
------atacaaaattagaactaaagatgctcataatattcattggtttacaaactttacatgaacaattttgttagggtacaacttactggtacggagg |
310 |
Q |
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| T |
19203174 |
taagctatacaaaattagaactaaagatgctcataatattcattggtttacaaactttacatgaacaattttgttagggtacaacttactggtacggagg |
19203075 |
T |
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| Q |
311 |
agaacaaatctgatcttggcgccacaagggataggaaaatacctatacagaagaaccagtctttcaaaggtgatatttggttatctgttgttagaactag |
410 |
Q |
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| T |
19203074 |
agaacaaatctgatcttggcgccacaagggataggaaaatacctatacagaagaaccagtctttcaaaggtgatatttggttatctgttgttagaactag |
19202975 |
T |
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| Q |
411 |
agtgttataattagatgtagaat |
433 |
Q |
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| T |
19202974 |
agtgttataattagatgtagaat |
19202952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 254 - 393
Target Start/End: Complemental strand, 19199238 - 19199099
Alignment:
| Q |
254 |
tggtttacaaactttacatgaacaattttgttagggtacaacttactggtacggaggagaacaaatctgatcttggcgccacaagggataggaaaatacc |
353 |
Q |
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| T |
19199238 |
tggtttacaaactttacatgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacc |
19199139 |
T |
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| Q |
354 |
tatacagaagaaccagtctttcaaaggtgatatttggtta |
393 |
Q |
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| T |
19199138 |
tatgcagaaaactcagtctttcaaaggtaatgtttggtta |
19199099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 19199677 - 19199525
Alignment:
| Q |
20 |
ttgttacaatatttaccatgataatggtggcaacaagattgaaaaagctagtttttcaaggctagtttgcaataagttgaatattgaatatgaaaacttt |
119 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | || |||||||||| || ||||||||||||||||||| | |
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| T |
19199677 |
ttgttacaatatttaccatgtaaatggtggtaacaagattgaaaaagctagtttttcaacgttattttgcaataaattaaatattgaatatgaaaactat |
19199578 |
T |
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| Q |
120 |
tgagaatccatgtttgatcaacaagaatggaatctctccattgaaaatctcatgttttctct |
181 |
Q |
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| T |
19199577 |
tgagaacccttgtttgatca---------gaatctcaccattgaaaatctcatgttttctct |
19199525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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