View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8012_low_6 (Length: 424)

Name: NF8012_low_6
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8012_low_6
NF8012_low_6
[»] chr3 (4 HSPs)
chr3 (1-404)||(21623876-21624279)
chr3 (1-405)||(21597716-21598123)
chr3 (150-405)||(21645590-21645845)
chr3 (1-150)||(21645887-21646036)
[»] chr8 (3 HSPs)
chr8 (150-321)||(22768061-22768232)
chr8 (15-148)||(22768279-22768412)
chr8 (365-405)||(22767974-22768014)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 21624279 - 21623876
Alignment:
Q  1 caacagcggtatcctggttactttattcaagagaccaaatttggaaatcggaaattttgctttcatatgcgatcctttatcagatgattcacagtcgaag 100  Q
    ||||| |||||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||||   |||||| |||||||||||    
T  21624279 caacaacggtatcctggttaatttattcaagaggccttatttggaaatcggaaattttgctttcatatgtgatcctttacacgatgatacacagtcgaag 21624180  T
Q  101 gcgattatgaaattcacttttggtggtattgacgaaagttacaaggagatttacactattttatcccttgaacagatggatcaaatgcaggaaatcactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21624179 gcgattatgaaattcacttttggtggtattgacgaaagttacaaggagatttacactattttatcccttgaacagatggatcaaatgcaggaaatcagtg 21624080  T
Q  201 gaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaagctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctag 300  Q
    ||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21624079 gaggagatgaaaataggttgttatatttgacaaaaaaccttgggttgaagctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctag 21623980  T
Q  301 cgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccataatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  21623979 cgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccataatccaaagaagaaataatttgcatatgggggtgcttgttatccagttctg 21623880  T
Q  401 actt 404  Q
    ||||    
T  21623879 actt 21623876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 21598123 - 21597716
Alignment:
Q  1 caacagcggtatcctggttactttattcaagagaccaaatttggaaatcggaaattttgctttcatatgcgatcctttatcagatgattcacagtcgaag 100  Q
    ||||| |||||||||||||| |||||||||| | || ||||||||||| |||||||||||||||||||| |||||||||  |||||||||||| ||||||    
T  21598123 caacaacggtatcctggttaatttattcaagcggcctaatttggaaattggaaattttgctttcatatgtgatcctttacaagatgattcacaatcgaag 21598024  T
Q  101 gcgattatgaaattcacttttggtggtattgacgaaagttacaaggagatttacactattttatcccttgaacagatggatcaaatgcaggaaatcactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21598023 gcgattatgaaattcacttttggtggtattgacgaaagttacaaggagatttacactattttatcccttgaacagatggatcaaatgcaggaaatcaatg 21597924  T
Q  201 gaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaagctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctag 300  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  21597923 gaggagatgaaaataggttgttatatttgacaaaaaacctcgggttgaagctaatgggtttgagtgctttactcattgctggtaatgatgtaatagctag 21597824  T
Q  301 cgttgctgcctcccgaaaaggtagatcaaggaacc----gaaaaattccccataatccaaagaagaaatagtttgcatataggggtgcttgttatccagt 396  Q
    ||||||||||||||| ||| ||||||||| |||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  21597823 cgttgctgcctcccg-aaatgtagatcaaagaaccgaaagaaaaattccccataatccaaagaagaaatagtttgcatatgggggtgcttgttatctagt 21597725  T
Q  397 tctgacttg 405  Q
    |||||||||    
T  21597724 tctgacttg 21597716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 150 - 405
Target Start/End: Complemental strand, 21645845 - 21645590
Alignment:
Q  150 tttacactattttatcccttgaacagatggatcaaatgcaggaaatcactggaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaa 249  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||  | |||||||||||| ||||||||| ||||||||||    
T  21645845 tttacactattttatccattgaacaggtggatcgaatgcaggaaattactggaggagatgaaaccatgttgtcatatttgacaaaaaacctcgggttgaa 21645746  T
Q  250 gctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccat 349  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21645745 gctaatgggtttgagcgctttactcattgccggtaatgatgtaatagctagcgttgctgcctcccgaaaaggtagatcaaggaaccgaaaaattccccat 21645646  T
Q  350 aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21645645 aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttg 21645590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 21646036 - 21645887
Alignment:
Q  1 caacagcggtatcctggttactttattcaagagaccaaatttggaaatcggaaattttgctttcatatgcgatcctttatcagatgattcacagtcgaag 100  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||  |||||||||||||||||| |||||||||||    
T  21646036 caacagcggtatcctggttaatttattcaagagacctaatttggaattcggaaatttttctttcatatctgatcctttatcagatgatccacagtcgaag 21645937  T
Q  101 gcgattatgaaattcacttttggtggtattgacgaaagttacaaggagat 150  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  21645936 gcgattatgcaattcacttttggtggtaatgaagaaagttacaaggagat 21645887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 150 - 321
Target Start/End: Complemental strand, 22768232 - 22768061
Alignment:
Q  150 tttacactattttatcccttgaacagatggatcaaatgcaggaaatcactggaggagatgaaaataggttgtcatatttaacaaaaaacatcgggttgaa 249  Q
    |||||||||||||||||| ||||||| |||||||| ||||| |||| || | ||||||||||||||||||||||||||| ||| ||||| | || |||||    
T  22768232 tttacactattttatcccgtgaacaggtggatcaagtgcagcaaattaccgaaggagatgaaaataggttgtcatatttgacagaaaacctaggtttgaa 22768133  T
Q  250 gctaatgggtttgagcgctttactcattgccggtaatgacgtaatagctagcgttgctgcctcccgaaaagg 321  Q
    ||||||||| || || |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||    
T  22768132 gctaatgggattaagtgctttactcattgctggtaatgacgtaatagctagcattgctggctcccgaaaagg 22768061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 22768412 - 22768279
Alignment:
Q  15 tggttactttattcaagagaccaaatttggaaatcggaaattttgctttcatatgcgatcctttatcagatgattcacagtcgaaggcgattatgaaatt 114  Q
    |||||| |||||||||||| ||  ||||||||   || ||||| ||||||||||  |||||||| ||||| ||| | |||||||| |||||| || || |    
T  22768412 tggttaatttattcaagaggcctgatttggaatctgggaatttcgctttcatatatgatcctttctcagaagatccgcagtcgaaagcgattctgcaaat 22768313  T
Q  115 cacttttggtggtattgacgaaagttacaaggag 148  Q
     || ||||||||||  || |||||||||||||||    
T  22768312 gacatttggtggtaccgaagaaagttacaaggag 22768279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 22768014 - 22767974
Alignment:
Q  365 tagtttgcatataggggtgcttgttatccagttctgacttg 405  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  22768014 tagtttgcatatagggatgcgtgttatccagttctgacttg 22767974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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