View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_low_7 (Length: 393)
Name: NF8012_low_7
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 32192227 - 32191864
Alignment:
| Q |
16 |
cttagcaagtggacttaacatacatagtaatcagctattcattaataatttcatgtgggaagaaggtcgattgagaatgtacttgaagcttttccctgaa |
115 |
Q |
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| T |
32192227 |
cttagcaagtggacttaacatacatagtaatcagctattcattaataatttcatgtgggaagaaggtcgattgagaatgtacttgaagctttttcctgaa |
32192128 |
T |
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| Q |
116 |
tatgttgataatacaagctctcatactttcaatgaaagcgaggttattcggctaagagacttgttcagagaatgggatatccatgagagtgacttgtttg |
215 |
Q |
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| T |
32192127 |
tatgttgataatacaagctctcatactttcaatgaaagcgaggttattcggctaagagacttgttcagagaatgggatatccatgagagtgacttgtttg |
32192028 |
T |
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| Q |
216 |
gaccttatgaacttctagacttcgttctcctcgatccttacaaagatggtaagtaaaaagaaacttaatatcactagaattcaataatgaatctgctgat |
315 |
Q |
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| T |
32192027 |
gaccttatgaacttctagacttcgttctcctcgatccttacgaagatggtaagtaaaaagaaacttaacgtcactagaatttagtaatgaatctgctgct |
32191928 |
T |
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| Q |
316 |
gcatactgcaacaaaccctatttcatcgataaatacagttgaactcgttacttattatctctgc |
379 |
Q |
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| T |
32191927 |
gcatactgcaacaaaccctatttcattgataaatacagttgaactcgttacttatcatctctgc |
32191864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 28287760 - 28287823
Alignment:
| Q |
89 |
agaatgtacttgaagcttttccctgaatatgttgataatacaagctctcatactttcaatgaaa |
152 |
Q |
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| T |
28287760 |
agaatggacttgaagtttttccctttatatgttgatcataatagttctcatactttcaatgaaa |
28287823 |
T |
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