View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8012_low_8 (Length: 339)
Name: NF8012_low_8
Description: NF8012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8012_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 39002813 - 39002533
Alignment:
| Q |
10 |
tatgtatgaataatatttcagaaaataaagatttaaatttgcgagaattcgtatgtctaactaacattttagagagtcaaaatcaattccaaaatccaac |
109 |
Q |
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| T |
39002813 |
tatgtctgactaacatttcaggaaataaagatttaaattggcgagaattcgtatgtctaactaacattttagagagtcaaaatcaattccaaaatcc--- |
39002717 |
T |
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| Q |
110 |
ccaattacgataaataaagatgtgtgacttcaatgcttgacatgtatgtcatactaataaaacagacaaaactccatttctcgactagcggctgagttgg |
209 |
Q |
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| T |
39002716 |
-caattacgataaataaagatgtgtgacttcaatgcttgacatgtatgtcatactaataaaacagacaaaactccatttctcgactagccgctgagttgg |
39002618 |
T |
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| Q |
210 |
tgagggtaatgtccctatcacccacctagaaccaagtattcacttaaggaacaggaaaacatacatcttggccaaggagttctttcccaa |
299 |
Q |
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| T |
39002617 |
tgagggtaatg----tatcacccacctagaaccaagtattcactt-aggaacaggaaaacatacatcttggccaaggagttctttcccaa |
39002533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 39002520 - 39002484
Alignment:
| Q |
297 |
caactatgttgaggatccacctccgaccaacacgaaa |
333 |
Q |
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| T |
39002520 |
caactatgttgaggatccacctccgaccaacatgaaa |
39002484 |
T |
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