View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8013_high_1 (Length: 661)

Name: NF8013_high_1
Description: NF8013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8013_high_1
NF8013_high_1
[»] scaffold0110 (3 HSPs)
scaffold0110 (16-661)||(29484-30128)
scaffold0110 (52-661)||(12658-13271)
scaffold0110 (52-661)||(20395-21008)
[»] chr4 (17 HSPs)
chr4 (349-425)||(23719308-23719385)
chr4 (349-398)||(17534346-17534396)
chr4 (345-425)||(22638068-22638149)
chr4 (349-425)||(36157281-36157358)
chr4 (349-425)||(44801792-44801869)
chr4 (349-400)||(32319551-32319603)
chr4 (375-425)||(10062549-10062599)
chr4 (349-398)||(27579272-27579322)
chr4 (349-425)||(8459521-8459598)
chr4 (349-413)||(12759770-12759835)
chr4 (349-425)||(12886452-12886529)
chr4 (345-425)||(22529694-22529775)
chr4 (349-425)||(26629463-26629540)
chr4 (349-425)||(49487804-49487881)
chr4 (349-425)||(54682951-54683028)
chr4 (490-530)||(31639068-31639108)
chr4 (373-413)||(41376482-41376522)
[»] chr1 (10 HSPs)
chr1 (349-425)||(12857641-12857718)
chr1 (349-425)||(15608853-15608930)
chr1 (349-425)||(31730549-31730626)
chr1 (349-398)||(7065060-7065110)
chr1 (375-425)||(14091014-14091064)
chr1 (349-398)||(46136820-46136870)
chr1 (349-425)||(21091559-21091636)
chr1 (349-425)||(43684729-43684806)
chr1 (349-400)||(43741176-43741228)
chr1 (344-400)||(51549668-51549724)
[»] chr2 (12 HSPs)
chr2 (349-424)||(11723564-11723640)
chr2 (349-424)||(25900803-25900878)
chr2 (349-405)||(8846779-8846836)
chr2 (349-400)||(18479655-18479706)
chr2 (349-419)||(25903566-25903637)
chr2 (349-398)||(20892619-20892669)
chr2 (349-398)||(10300403-10300452)
chr2 (349-425)||(13500016-13500093)
chr2 (349-425)||(21099732-21099809)
chr2 (349-425)||(45194556-45194633)
chr2 (373-425)||(1598709-1598761)
chr2 (373-425)||(8846931-8846983)
[»] chr7 (16 HSPs)
chr7 (349-425)||(40081837-40081914)
chr7 (349-398)||(31857656-31857706)
chr7 (349-425)||(40934472-40934549)
chr7 (373-425)||(25513562-25513614)
chr7 (349-398)||(2285535-2285585)
chr7 (349-398)||(27689377-27689427)
chr7 (375-425)||(41506519-41506569)
chr7 (349-425)||(8238664-8238741)
chr7 (350-398)||(28387647-28387696)
chr7 (349-425)||(33253611-33253688)
chr7 (349-425)||(41541849-41541926)
chr7 (376-425)||(43073069-43073118)
chr7 (376-425)||(45150695-45150744)
chr7 (373-425)||(24838094-24838146)
chr7 (350-425)||(30071843-30071919)
chr7 (373-413)||(44157972-44158012)
[»] chr3 (15 HSPs)
chr3 (349-425)||(54767812-54767889)
chr3 (350-425)||(45953944-45954020)
chr3 (349-425)||(34785083-34785160)
chr3 (349-425)||(46175612-46175689)
chr3 (373-425)||(40593640-40593692)
chr3 (349-425)||(48128652-48128728)
chr3 (349-398)||(11194778-11194828)
chr3 (344-425)||(16852496-16852578)
chr3 (349-398)||(17605147-17605197)
chr3 (349-398)||(34784676-34784726)
chr3 (349-425)||(31270993-31271070)
chr3 (349-425)||(46799370-46799447)
chr3 (373-425)||(170938-170990)
chr3 (373-425)||(31798105-31798157)
chr3 (349-393)||(42541331-42541374)
[»] scaffold0076 (1 HSPs)
scaffold0076 (376-425)||(16326-16375)
[»] scaffold0045 (1 HSPs)
scaffold0045 (349-425)||(22002-22079)
[»] chr8 (6 HSPs)
chr8 (349-425)||(4018159-4018236)
chr8 (349-425)||(28237317-28237394)
chr8 (348-425)||(32222684-32222762)
chr8 (349-398)||(34214686-34214736)
chr8 (349-425)||(4718156-4718233)
chr8 (349-425)||(35065542-35065619)
[»] chr6 (6 HSPs)
chr6 (349-425)||(29681630-29681707)
chr6 (357-425)||(32603300-32603369)
chr6 (349-421)||(7466444-7466518)
chr6 (349-422)||(12693328-12693402)
chr6 (349-421)||(31842491-31842564)
chr6 (349-425)||(32132010-32132086)
[»] chr5 (9 HSPs)
chr5 (349-413)||(30187764-30187829)
chr5 (349-420)||(32701735-32701807)
chr5 (349-400)||(34578355-34578407)
chr5 (349-398)||(24802239-24802289)
chr5 (349-425)||(6042716-6042793)
chr5 (349-413)||(7401206-7401271)
chr5 (349-400)||(10737789-10737841)
chr5 (373-413)||(28770775-28770815)
chr5 (373-413)||(31163327-31163367)
[»] scaffold0115 (1 HSPs)
scaffold0115 (349-425)||(42880-42957)


Alignment Details
Target: scaffold0110 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 16 - 661
Target Start/End: Original strand, 29484 - 30128
Alignment:
Q  16 aaaacaagatgtagaaaatccattaataatcaaattttaaactattgatgcagatggaactggcaaagtaaattggaaaggtgtagcgtactacaacaga 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29484 aaaacaagatgtagaaaatccattaataatcaa-ttttaaactattgatgcagatggaactggcaaagtaaattggaaaggtgtagcgtactacaacaga 29582  T
Q  116 ttgatcgattacttgctagaaaagggtaattttttatgtatctattgtcgaaatactaacatagttttggaaatgtaatgttaattttaatcgcttgttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29583 ttgatcgattacttgctagaaaagggtaattttttatgtatccctagtcgaaatactaacatagttttggaaatgtaatgttaattttaatcgctcgttg 29682  T
Q  216 tgattttgttccttaaaccgttgcaggcattactccttacgcaaatctctaccattatgaccttcctttagctcttgagttgaaatacaacggtttattg 315  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29683 tgtttttgttccttaaaccgttgcaggcattactccttacgcaaatctctaccattatgaccttcctttagctcttgagttgaaatacaacggtttattg 29782  T
Q  316 agccataatgttgtgtaagtacttacatagacaaaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttatctggactacaaacga 415  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29783 agccgtaatgttgtgtaagtacttacatagacaaaaaatgttgatagaaaattttacgggactaaaaaatgtgattttattttatctggactaaaaacga 29882  T
Q  416 aattctgaatcatcaatgttttaaaattggacaggaaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggat 515  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29883 aattctgaatgatcaatgttttaaaattggacagaaaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggat 29982  T
Q  516 gaccttcaatgaaccaagagttgttgctgcacttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctgga 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29983 gaccttcaatgaaccaagagttgttgctgcacttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctgga 30082  T
Q  616 aattcaggaactgagccttatactgtagctcacaatttgatattgt 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30083 aattcaggaactgagccttatactgtagctcacaatttgatattgt 30128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 52 - 661
Target Start/End: Original strand, 12658 - 13271
Alignment:
Q  52 ttaaactattgatgcagatggaactggcaaagtaaattggaaaggtgtagcgtactacaacagattgatcgattacttgctagaaaagggtaatttttta 151  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  12658 ttaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttactagaaaagggtaagttttta 12757  T
Q  152 tgtatctattgtcgaaatactaacatagttttggaaatgtaatgttaatt-ttaatcgcttgttgtgattttgttccttaaacc---gttgcaggcatta 247  Q
     ||| | || ||||||||| ||||||||||| |||||||||||||||| | |||||  ||| ||||| ||||||||||||||||   |||||||||||||    
T  12758 cgtagccatagtcgaaatagtaacatagtttaggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaaacctatgttgcaggcatta 12857  T
Q  248 ctccttacgcaaatctctaccattatgaccttcctttagctcttgagttgaaatacaacggtttattgagccataatgttgtgtaagtacttacatagac 347  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||    
T  12858 ctccttatgcaaatctctaccattatgaccttcctctagctcttgagttgaaatacaacggtttattaaaccgtaatgttgtgtaagtacttacatcgac 12957  T
Q  348 aaaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaatcatcaatgttttaaaattggac 447  Q
     ||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||||||||     
T  12958 taaaaacgttgatagaaaattttacaggactaaaaaatgtgattttattttatatggactaaaaacgaaattctgaatgctcaatgttttaaaattggat 13057  T
Q  448 aggaaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggatgaccttcaatgaaccaagagttgttgctgcac 547  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  13058 aggaaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcac 13157  T
Q  548 ttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctca 647  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  13158 ttggttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctca 13257  T
Q  648 caatttgatattgt 661  Q
    ||||||||||||||    
T  13258 caatttgatattgt 13271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 52 - 661
Target Start/End: Original strand, 20395 - 21008
Alignment:
Q  52 ttaaactattgatgcagatggaactggcaaagtaaattggaaaggtgtagcgtactacaacagattgatcgattacttgctagaaaagggtaatttttta 151  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  20395 ttaaactattgatgcagatggtactggcaaagtaaattggaaaggtgtagcatactacaacagattgatcgattacttactagaaaagggtaagttttta 20494  T
Q  152 tgtatctattgtcgaaatactaacatagttttggaaatgtaatgttaatt-ttaatcgcttgttgtgattttgttccttaaacc---gttgcaggcatta 247  Q
     ||| | || ||||||||| ||||||||||| |||||||||||||||| | |||||  ||| ||||| ||||||||||||||||   |||||||||||||    
T  20495 cgtagccatagtcgaaatagtaacatagtttaggaaatgtaatgttaaatattaatttcttattgtgtttttgttccttaaacctatgttgcaggcatta 20594  T
Q  248 ctccttacgcaaatctctaccattatgaccttcctttagctcttgagttgaaatacaacggtttattgagccataatgttgtgtaagtacttacatagac 347  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||    
T  20595 ctccttatgcaaatctctaccattatgaccttcctctagctcttgagttgaaatacaacggtttattaaaccgtaatgttgtgtaagtacttacatcgac 20694  T
Q  348 aaaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaatcatcaatgttttaaaattggac 447  Q
     ||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||||||||     
T  20695 taaaaacgttgatagaaaattttacaggactaaaaaatgtgattttattttatatggactaaaaacgaaattctgaatgctcaatgttttaaaattggat 20794  T
Q  448 aggaaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggatgaccttcaatgaaccaagagttgttgctgcac 547  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  20795 aggaaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcac 20894  T
Q  548 ttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctca 647  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  20895 ttggttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctca 20994  T
Q  648 caatttgatattgt 661  Q
    ||||||||||||||    
T  20995 caatttgatattgt 21008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 23719308 - 23719385
Alignment:
Q  349 aaaaatgctgatagaaaattttacgg-gactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||  |||||| |||| |||||| ||||    
T  23719308 aaaaatgctgatagaaaattttatagagactaaaaaatgtgattttattttatagggactaaaaacaaaattcagaat 23719385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 17534346 - 17534396
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  17534346 aaaaatgctgatggaaaattttatagggactaaaaaatgtgattttatttt 17534396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 22638149 - 22638068
Alignment:
Q  345 gacaaaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| |||| ||||||||||  ||||||||||| |||||||||||||| |  ||| || |||| |||||||||||    
T  22638149 gacaaaaaatgttgatggaaaattttatagggactaaaaagtgtgattttattttgtagggattaaaaacaaaattctgaat 22638068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 36157358 - 36157281
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||||| |||||||||||| |  |||||| |||| |||||||||||    
T  36157358 aaaaatgttgatggaaaattttatagggactaaaaaatatgattttattttgtagggactaaaaacaaaattctgaat 36157281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 44801869 - 44801792
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| | ||||||||  ||||||||||||| |||||||||||| |  |||||| |||| |||||||||||    
T  44801869 aaaaatgctgatgggaaattttatagggactaaaaaatatgattttattttgtagggactaaaaacaaaattctgaat 44801792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 32319603 - 32319551
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttat 400  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  32319603 aaaaatgctgacagaaaattttatagggactaaaaagtgtgattttattttat 32319551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 10062599 - 10062549
Alignment:
Q  375 gactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||||||||||||||||||  |||||| |||| ||||| |||||    
T  10062599 gactaaaaaatgtgattttattttataaggactaaaaacaaaattgtgaat 10062549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 27579322 - 27579272
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  27579322 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 27579272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 8459521 - 8459598
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| |||||| |||  ||||||||||| |||||||||||||| |  ||| || |||| |||||||||||    
T  8459521 aaaaatgctgatggaaaatcttatagggactaaaaagtgtgattttattttgtagggattaaaaacaaaattctgaat 8459598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 12759770 - 12759835
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    |||||||||||| ||||||||||   |||||||||| ||||||||||||||||  |||||| ||||    
T  12759770 aaaaatgctgatggaaaattttatatggactaaaaagtgtgattttattttattgggactaaaaac 12759835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 12886529 - 12886452
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||||  |||||||||  |||||||||||||  ||||||||||| |  |||||| |||| |||||||||||    
T  12886529 aaaaatgctgatgaaaaattttatagggactaaaaaatacgattttattttgtagggactaaaaacaaaattctgaat 12886452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 22529694 - 22529775
Alignment:
Q  345 gacaaaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||||||||  ||| |||||  ||||| ||||| |||||||||||||||   |||||| |||| |||||||||||    
T  22529694 gacaaaaaatgctgatgaaaatttttatagggaccaaaaagtgtgattttattttacaaggactaaaaacaaaattctgaat 22529775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 26629540 - 26629463
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||  |||||||| || ||||||||||| |||||||||||||| |  |||||| ||| |||||| |||||    
T  26629540 aaaaatgctgacggaaaatttcacagggactaaaaagtgtgattttattttgtagggactaaaaatgaaattttgaat 26629463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 49487881 - 49487804
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||   ||||||||||||||||||||||||| |  |||||| || | |||||||||||    
T  49487881 aaaaatgttgatggaaaattttataaggactaaaaaatgtgattttattttgtagggactaaaagcaaaattctgaat 49487804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 54683028 - 54682951
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| | ||| |||||||||  ||||||||||| ||| ||||||||||||  |||||| |||| |||||||||||    
T  54683028 aaaaatgttaataaaaaattttatagggactaaaaagtgtaattttattttattgggactaaaaactaaattctgaat 54682951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 530
Target Start/End: Original strand, 31639068 - 31639108
Alignment:
Q  490 tttggagacagagttaagaattggatgaccttcaatgaacc 530  Q
    |||||||||||||||||| | ||||| ||||||||||||||    
T  31639068 tttggagacagagttaagcactggattaccttcaatgaacc 31639108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 41376482 - 41376522
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  41376482 gggactaaaaaatgtgattttattttgtatggactaaaaac 41376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 12857718 - 12857641
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||||||||| | ||||||| |||| |||||||||||    
T  12857718 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttattttgtatggactaaaaacaaaattctgaat 12857641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 15608853 - 15608930
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||| |  |||||| |||  |||||||||||    
T  15608853 aaaaatgctgatagaaaattttatagggactaaaaagtgtgattttattttgtagggactaaaaataaaattctgaat 15608930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 31730626 - 31730549
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  31730626 aaaaatgttgatggaaaattttatagggactaaaaattgtgattttattttgtagggactaaaaacaaaattctgaat 31730549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 7065110 - 7065060
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  7065110 aaaaatgctgatggaaaattttatagggactaaaaactgtgattttatttt 7065060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 14091064 - 14091014
Alignment:
Q  375 gactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  14091064 gactaaaaagtgtgattttattttatagggactaaaaacaaaattctgaat 14091014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 46136820 - 46136870
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  46136820 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 46136870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 21091559 - 21091636
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||   ||| |||||| |||||||||||||| | ||||||| |||| |||||||||||    
T  21091559 aaaaatgttgatggaaaattttaaatggattaaaaagtgtgattttattttgtatggactaaaaacaaaattctgaat 21091636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 43684806 - 43684729
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||| |  |||||||||  ||||||||||| ||||||||||||||||  |||||| |||| ||||| |||||    
T  43684806 aaaaatgctgctgaaaaattttatagggactaaaaagtgtgattttattttatagggactaaaaacaaaattgtgaat 43684729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 43741228 - 43741176
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttat 400  Q
    ||||||||||||  ||| |||||| ||||||||||| ||||||||||||||||    
T  43741228 aaaaatgctgatgaaaatttttacagggactaaaaagtgtgattttattttat 43741176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 51549724 - 51549668
Alignment:
Q  344 agacaaaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttat 400  Q
    |||| ||||||||||||  ||| ||||| ||| ||||||| ||||||||||||||||    
T  51549724 agactaaaaatgctgatgaaaatttttatggggctaaaaagtgtgattttattttat 51549668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 11723564 - 11723640
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaa 424  Q
    ||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||  |||||| |||| ||||||||||    
T  11723564 aaaaatgttgatggaaaattttacagggactaaaaagtgtgattttattttatagggactaaaaacaaaattctgaa 11723640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 25900878 - 25900803
Alignment:
Q  349 aaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaa 424  Q
    ||||||| |||| ||||||||||  |||||||||| | ||||||||||||||  |||||| |||| ||||||||||    
T  25900878 aaaaatgttgatggaaaattttataggactaaaaagtatgattttattttatagggactaaaaacaaaattctgaa 25900803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 8846836 - 8846779
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctgga 405  Q
    ||||||||| || ||||||||||  |||||||||||||||||||||||||||| ||||    
T  8846836 aaaaatgctaatggaaaattttatagggactaaaaaatgtgattttattttatatgga 8846779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 18479655 - 18479706
Alignment:
Q  349 aaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttat 400  Q
    |||| ||||||| ||||||||||  |||||||||||| ||||||||||||||    
T  18479655 aaaagtgctgatggaaaattttataggactaaaaaatttgattttattttat 18479706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 25903566 - 25903637
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaatt 419  Q
    ||||||| |||| ||||||||||  |||| |||||||||||||||||||||||  |||||| |||| |||||    
T  25903566 aaaaatgttgatggaaaattttatagggattaaaaaatgtgattttattttatagggactaaaaacaaaatt 25903637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 20892669 - 20892619
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    ||||||| |||| ||||||||||  ||||||||||||||||||||||||||    
T  20892669 aaaaatgttgatggaaaattttatagggactaaaaaatgtgattttatttt 20892619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 10300452 - 10300403
Alignment:
Q  349 aaaaatgctgatagaaaattttacgggactaaaaaatgtgattttatttt 398  Q
    |||||| || || |||||||||||  ||||||||||||||||||||||||    
T  10300452 aaaaatactaatggaaaattttacaagactaaaaaatgtgattttatttt 10300403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 13500016 - 13500093
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||| || | |||||| |||||||||||||| |  |||||| | || |||||||||||    
T  13500016 aaaaatgctgatggaaaattttacaggaattaaaaagtgtgattttattttgtagggactaaatacaaaattctgaat 13500093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 21099809 - 21099732
Alignment:
Q  349 aaaaatgctgatagaaaattttacggga-ctaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| |||| |||||  ||| |||||||||||||||||||||| |  |||||| |||| ||||| |||||    
T  21099809 aaaaatgctgatggaaatttttataggaactaaaaaatgtgattttattttgtagggactaaaaacaaaattgtgaat 21099732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 45194633 - 45194556
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||   ||| |||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  45194633 aaaaatgttgatggaaaattttataaggattaaaaagtgtgattttattttatagggactaaaaacaaaattctgaat 45194556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 1598761 - 1598709
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  1598761 gggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaat 1598709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 8846931 - 8846983
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| ||||||||||||||||  |||||| |||| ||||| |||||    
T  8846931 gggactaaaaagtgtgattttattttatagggactaaaaacaaaattgtgaat 8846983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 40081837 - 40081914
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||| |  |||||| |||  |||||||||||    
T  40081837 aaaaatgctgatggaaaattttatagggactaaaaaatgtgattttattttgtagggactaaaaataaaattctgaat 40081914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 31857656 - 31857706
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||    
T  31857656 aaaaatgttgatagaaaattttatagggactaaaaaatgtgattttatttt 31857706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 40934549 - 40934472
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||| ||||||||||||||||  |||||| |||  |||||||||||    
T  40934549 aaaaatgttgatggaaaattttatagggactaaaaagtgtgattttattttatagggactaaaaataaaattctgaat 40934472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 25513562 - 25513614
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  25513562 gggactaaaaagtgtgattttattttatggggactaaaaacaaaattctgaat 25513614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 2285535 - 2285585
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  2285535 aaaaatgctgatggaaaattttatagggactaaaaattgtgattttatttt 2285585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 27689427 - 27689377
Alignment:
Q  349 aaaaatgctgatagaaaattttacggga-ctaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||| ||||||||||||||||||||||    
T  27689427 aaaaatgctgatggaaaattttataggaactaaaaaatgtgattttatttt 27689377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 41506519 - 41506569
Alignment:
Q  375 gactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  41506519 gactaaaaagtgtgattttattttatagggactaaaaacaaaattctgaat 41506569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 8238741 - 8238664
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||| ||||||||||||||||  |||| | |||| ||||| |||||    
T  8238741 aaaaatgttgatggaaaattttatagggactaaaaagtgtgattttattttataaggacgaaaaacaaaattgtgaat 8238664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 28387696 - 28387647
Alignment:
Q  350 aaaatgctgatagaaaattttacgg-gactaaaaaatgtgattttatttt 398  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  28387696 aaaatgctgatggaaaattttatagagactaaaaaatgtgattttatttt 28387647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 33253688 - 33253611
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||||||| |||||||||| |  |||||| |||  |||||||||||    
T  33253688 aaaaatgttgatggaaaattttatagggactaaaaaatgtaattttattttgtagggactaaaaataaaattctgaat 33253611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 41541849 - 41541926
Alignment:
Q  349 aaaaatgctgatagaaaattttacgg-gactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  | ||||||||||| |||||||||||| | ||||||| |||  |||||||||||    
T  41541849 aaaaatgttgatggaaaattttatagagactaaaaaatatgattttattttgtatggactaaaaataaaattctgaat 41541926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 43073069 - 43073118
Alignment:
Q  376 actaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||||||||||||||||  |||||| |||| ||||| |||||    
T  43073069 actaaaaaatgtgattttattttatagggactaaaaacaaaattgtgaat 43073118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 45150744 - 45150695
Alignment:
Q  376 actaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  45150744 actaaaaagtgtgattttattttataaggactaaaaacaaaattctgaat 45150695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 24838146 - 24838094
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  24838146 gggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaat 24838094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 30071843 - 30071919
Alignment:
Q  350 aaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||| |||| ||||||||||  ||||||||||| ||| ||||||||||||  | |||| |||| |||||||||||    
T  30071843 aaaatgatgatggaaaattttatagggactaaaaagtgttattttattttataggaactaaaaacaaaattctgaat 30071919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 44158012 - 44157972
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    ||||||||||||||||||||||||||||  |||||| ||||    
T  44158012 gggactaaaaaatgtgattttattttataaggactaaaaac 44157972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 54767812 - 54767889
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||| |||||||||||||| | ||||||| |||| |||||||||||    
T  54767812 aaaaatgttgatggaaaattttatagggactaaaaagtgtgattttattttgtatggactaaaaacaaaattctgaat 54767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 45954020 - 45953944
Alignment:
Q  350 aaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| ||||||||||   |||||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  45954020 aaaatgctgatggaaaattttataaggactaaaaagtgtgattttattttatagggactaaaaacaaaattctgaat 45953944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 34785083 - 34785160
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  34785083 aaaaatgttgatggaaaattttatagggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaat 34785160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 46175689 - 46175612
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||  ||||||||||||| |||||||||||| |  |||||| |||| ||||| |||||    
T  46175689 aaaaatgctgatggaaaattttatagggactaaaaaatatgattttattttgtagggactaaaaacaaaattatgaat 46175612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 40593692 - 40593640
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  40593692 gggactaaaaagtgtgattttattttatagggactaaaaacaaaattctgaat 40593640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 48128652 - 48128728
Alignment:
Q  349 aaaaatgctgatagaaaattttacgggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||  ||| |||||  |||||||||||||| | | ||||| |||| |||||||||||    
T  48128652 aaaaatgctgatggaaaattttataggattaaaatgtgtgattttattttgtatagactaaaaacaaaattctgaat 48128728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 11194778 - 11194828
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  11194778 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 11194828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 16852496 - 16852578
Alignment:
Q  344 agacaaaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||| |||||||||||| ||||||||||   |||||||||| ||| ||||||||||||  |||||| |||| ||||| |||||    
T  16852496 agacgaaaaatgctgatggaaaattttataaggactaaaaagtgtaattttattttatagggactaaaaacaaaattttgaat 16852578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 17605147 - 17605197
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  17605147 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 17605197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 34784676 - 34784726
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  34784676 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 34784726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 31270993 - 31271070
Alignment:
Q  349 aaaaatgctgatagaaaattttacggga-ctaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||  ||| ||||||| |||||||||||||| |  |||||| |||| |||||| ||||    
T  31270993 aaaaatgctgatggaaaattttataggaactaaaaagtgtgattttattttgtagggactaaaaacaaaattcggaat 31271070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 46799447 - 46799370
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||   |||||||||| |||||||||||||| | ||||||| |||| ||| |||||||    
T  46799447 aaaaatgttgatggaaaattttatatggactaaaaagtgtgattttattttgtatggactaaaaacaaaactctgaat 46799370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 170938 - 170990
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| | |||||||||||| | ||||||| |||| |||||||||||    
T  170938 gggactaaaaagtatgattttattttgtatggactaaaaacaaaattctgaat 170990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 31798157 - 31798105
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  31798157 gggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaat 31798105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 42541374 - 42541331
Alignment:
Q  349 aaaaatgctgatagaaaattttacgggactaaaaaatgtgatttt 393  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||    
T  42541374 aaaaatgctgat-gaaaattttatgggactaaaaagtgtgatttt 42541331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 16375 - 16326
Alignment:
Q  376 actaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||||||||||||||||  |||||| |||| |||||||||||    
T  16375 actaaaaaatgtgattttattttatagggactaaaaacaaaattctgaat 16326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 22079 - 22002
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||   ||||||||||||||||||||||||| |  |||||| |||| |||||||||||    
T  22079 aaaaatgttgatggaaaattttataaggactaaaaaatgtgattttattttgtggggactaaaaacaaaattctgaat 22002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 4018159 - 4018236
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||| ||| ||||||||||   |||||||||| ||||||||||||||||  |||||| |||| |||||||||||    
T  4018159 aaaaatgccgatggaaaattttataaggactaaaaagtgtgattttattttatagggactaaaaacaaaattctgaat 4018236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 28237394 - 28237317
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||  ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  28237394 aaaaatgttgatggaaaattttatagggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaat 28237317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 32222762 - 32222684
Alignment:
Q  348 aaaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||| |||| |||||||||||  ||||||||||||| ||||||||||||    || || ||||||||||||||||    
T  32222762 aaaaaatgatgatggaaaattttacaaggactaaaaaatgcgattttattttacagagaataaaaacgaaattctgaat 32222684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 34214686 - 34214736
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  34214686 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 34214736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 4718156 - 4718233
Alignment:
Q  349 aaaaatgctgatagaaaattttacggga-ctaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||  ||| ||||||| |||||||||||||| |  |||||| |||| ||||| |||||    
T  4718156 aaaaatgctgatggaaaattttataggaactaaaaagtgtgattttattttgtagggactaaaaacaaaattatgaat 4718233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 35065619 - 35065542
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| ||||  |||||||||  ||||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  35065619 aaaaatgttgatgaaaaattttatagggactaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaat 35065542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 29681707 - 29681630
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||   |||||||||| ||| ||||||||||||  |||||| |||| |||||||||||    
T  29681707 aaaaatgctgatggaaaattttataaggactaaaaagtgtaattttattttatagggactaaaaacaaaattctgaat 29681630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 425
Target Start/End: Complemental strand, 32603369 - 32603300
Alignment:
Q  357 tgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||| ||||||||| | |||||||||||||||||||||||||| |  ||||||||||  |||||||||||    
T  32603369 tgatggaaaattttgcagggactaaaaaatgtgattttattttgtagggactacaaataaaattctgaat 32603300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 7466444 - 7466518
Alignment:
Q  349 aaaaatgctgatagaaaattttac--gggactaaaaaatgtgattttattttatctggactacaaacgaaattct 421  Q
    |||||||||||| |||||||||    ||||||||||| ||||||||||||||||  |||||| |||| |||||||    
T  7466444 aaaaatgctgattgaaaatttttatagggactaaaaagtgtgattttattttataaggactaaaaacaaaattct 7466518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 12693402 - 12693328
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctg 422  Q
    ||||||||||||  |||||||||  ||||||||||| |||||||||||||| | |||| || |||| ||||||||    
T  12693402 aaaaatgctgatgcaaaattttatagggactaaaaagtgtgattttattttgtatggattaaaaacaaaattctg 12693328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 31842564 - 31842491
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattct 421  Q
    ||||||| |||||||||||||||  ||||||||||| || ||||||||||| |  |||||| |||| |||||||    
T  31842564 aaaaatgttgatagaaaattttatagggactaaaaagtgcgattttattttgtagggactaaaaacaaaattct 31842491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 32132086 - 32132010
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||||||| ||||||||||| | ||||||| | || ||||||||||||| ||||||| || | |||||||||||    
T  32132086 aaaaatgctgatggaaaattttacagagactaaatagtgcgattttattttatatggacta-aaccaaaattctgaat 32132010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 30187829 - 30187764
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    |||||||||| | ||||||||||  ||||||||||||||||||||||||||||  |||||| ||||    
T  30187829 aaaaatgctgctggaaaattttatagggactaaaaaatgtgattttattttatagggactaaaaac 30187764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 32701807 - 32701735
Alignment:
Q  349 aaaaatgctgatagaaaattttacgg-gactaaaaaatgtgattttattttatctggactacaaacgaaattc 420  Q
    |||||| ||||| ||||||||||  | |||||||||||||||||||||||||| || |||| |||| ||||||    
T  32701807 aaaaatactgatggaaaattttatagagactaaaaaatgtgattttattttatatgaactaaaaacaaaattc 32701735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 34578407 - 34578355
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttat 400  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||||    
T  34578407 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttattttat 34578355  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 24802239 - 24802289
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttatttt 398  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  24802239 aaaaatgctgatggaaaattttatagggactaaaaagtgtgattttatttt 24802289  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 6042716 - 6042793
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    |||||||| |||  |||||||||  ||||||||||| ||||||||||||||||  |||||| |||| ||||| |||||    
T  6042716 aaaaatgcggatgaaaaattttatagggactaaaaagtgtgattttattttatagggactaaaaacaaaattgtgaat 6042793  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 7401271 - 7401206
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    |||||||||||| ||||||||||  ||||||||||| |||| |||||||||||  |||||| ||||    
T  7401271 aaaaatgctgatggaaaattttatagggactaaaaagtgtggttttattttatagggactaaaaac 7401206  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 10737789 - 10737841
Alignment:
Q  349 aaaaatgctgatagaaaattttac-gggactaaaaaatgtgattttattttat 400  Q
    ||||||| |||| |||||||||   ||||||||||||||||||||||||||||    
T  10737789 aaaaatgttgatggaaaattttgtagggactaaaaaatgtgattttattttat 10737841  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 28770775 - 28770815
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    ||||||||||||||||||||||||||||  |||||| ||||    
T  28770775 gggactaaaaaatgtgattttattttatagggactaaaaac 28770815  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 31163327 - 31163367
Alignment:
Q  373 gggactaaaaaatgtgattttattttatctggactacaaac 413  Q
    ||||||||||||||||||||||||||||  |||||| ||||    
T  31163327 gggactaaaaaatgtgattttattttataaggactaaaaac 31163367  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 42957 - 42880
Alignment:
Q  349 aaaaatgctgatagaaaattttacg-ggactaaaaaatgtgattttattttatctggactacaaacgaaattctgaat 425  Q
    ||||||| |||| ||||||||||   |||||||||| |||||||||||||| |  |||||| |||| |||||||||||    
T  42957 aaaaatgttgatggaaaattttataaggactaaaaagtgtgattttattttgtggggactaaaaacaaaattctgaat 42880  T

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