View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8013_high_2 (Length: 619)

Name: NF8013_high_2
Description: NF8013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8013_high_2
NF8013_high_2
[»] chr7 (16 HSPs)
chr7 (1-601)||(25175965-25176565)
chr7 (167-235)||(43492246-43492314)
chr7 (168-227)||(39316345-39316404)
chr7 (139-209)||(27338228-27338298)
chr7 (175-240)||(5482447-5482511)
chr7 (142-235)||(5907794-5907885)
chr7 (174-235)||(19619993-19620054)
chr7 (138-227)||(26871737-26871825)
chr7 (142-227)||(34299795-34299880)
chr7 (167-227)||(38362249-38362309)
chr7 (173-235)||(24299175-24299237)
chr7 (167-225)||(46716173-46716231)
chr7 (171-228)||(24610889-24610946)
chr7 (142-178)||(27076232-27076268)
chr7 (142-178)||(27202033-27202069)
chr7 (143-235)||(44452086-44452176)
[»] chr4 (21 HSPs)
chr4 (1-105)||(4781066-4781170)
chr4 (169-227)||(49951742-49951800)
chr4 (144-235)||(23136551-23136642)
chr4 (144-215)||(41462020-41462091)
chr4 (146-229)||(53622278-53622359)
chr4 (146-235)||(53261531-53261620)
chr4 (169-237)||(2818355-2818423)
chr4 (135-227)||(52650742-52650834)
chr4 (142-209)||(24546778-24546844)
chr4 (135-237)||(8297833-8297935)
chr4 (167-235)||(17970804-17970873)
chr4 (167-235)||(21241121-21241189)
chr4 (168-227)||(27963166-27963226)
chr4 (168-228)||(49622997-49623057)
chr4 (171-238)||(36876098-36876165)
chr4 (173-227)||(45743315-45743369)
chr4 (169-227)||(50617492-50617550)
chr4 (140-209)||(24175468-24175537)
chr4 (142-227)||(47937833-47937917)
chr4 (137-201)||(32175397-32175461)
chr4 (194-238)||(53919889-53919933)
[»] chr8 (14 HSPs)
chr8 (144-235)||(1876526-1876617)
chr8 (136-235)||(44220754-44220851)
chr8 (148-228)||(2376779-2376859)
chr8 (168-235)||(11533227-11533294)
chr8 (142-229)||(31264966-31265053)
chr8 (167-235)||(12002261-12002329)
chr8 (142-202)||(24869383-24869443)
chr8 (169-229)||(30158112-30158172)
chr8 (142-181)||(40298850-40298889)
chr8 (169-227)||(18842307-18842365)
chr8 (143-209)||(25279899-25279965)
chr8 (142-215)||(27801290-27801363)
chr8 (174-227)||(37449541-37449594)
chr8 (167-235)||(14016911-14016979)
[»] chr1 (21 HSPs)
chr1 (144-229)||(33791789-33791874)
chr1 (144-238)||(39973863-39973957)
chr1 (133-227)||(40053253-40053347)
chr1 (132-229)||(35543453-35543550)
chr1 (142-235)||(49478781-49478875)
chr1 (142-238)||(3047836-3047932)
chr1 (183-237)||(1656446-1656500)
chr1 (129-235)||(48947160-48947266)
chr1 (168-225)||(37188576-37188633)
chr1 (167-227)||(42573821-42573881)
chr1 (142-209)||(5423816-5423883)
chr1 (142-229)||(34861262-34861349)
chr1 (142-235)||(16113888-16113981)
chr1 (142-238)||(31042970-31043066)
chr1 (142-238)||(33744176-33744272)
chr1 (184-227)||(290602-290645)
chr1 (183-234)||(51904614-51904665)
chr1 (169-227)||(27934781-27934839)
chr1 (168-238)||(48811928-48811998)
chr1 (142-227)||(48938-49023)
chr1 (142-227)||(31807832-31807917)
[»] chr3 (13 HSPs)
chr3 (146-227)||(48551013-48551094)
chr3 (137-227)||(45757893-45757983)
chr3 (173-229)||(12140145-12140201)
chr3 (144-237)||(24313522-24313615)
chr3 (168-228)||(28691975-28692035)
chr3 (136-229)||(54290827-54290920)
chr3 (168-236)||(25317800-25317868)
chr3 (139-229)||(43803936-43804025)
chr3 (169-238)||(37388403-37388472)
chr3 (173-210)||(45584395-45584432)
chr3 (143-227)||(11465677-11465761)
chr3 (140-204)||(50604020-50604084)
chr3 (171-227)||(54911199-54911255)
[»] chr5 (13 HSPs)
chr5 (173-237)||(38594973-38595037)
chr5 (141-240)||(10228288-10228385)
chr5 (142-215)||(8208148-8208221)
chr5 (171-237)||(14309129-14309195)
chr5 (135-228)||(34032141-34032234)
chr5 (168-235)||(4695067-4695134)
chr5 (186-240)||(27325863-27325917)
chr5 (141-215)||(30501204-30501278)
chr5 (141-215)||(30541547-30541621)
chr5 (174-227)||(21259470-21259523)
chr5 (143-187)||(10051700-10051744)
chr5 (173-229)||(17774332-17774388)
chr5 (168-212)||(39335665-39335709)
[»] chr2 (21 HSPs)
chr2 (168-227)||(4655013-4655072)
chr2 (167-234)||(24389668-24389735)
chr2 (146-238)||(6334713-6334805)
chr2 (173-237)||(9049192-9049256)
chr2 (137-226)||(21277517-21277606)
chr2 (144-228)||(30869613-30869695)
chr2 (168-229)||(33634848-33634909)
chr2 (143-229)||(6411424-6411510)
chr2 (169-235)||(12762915-12762981)
chr2 (167-229)||(12848522-12848584)
chr2 (167-235)||(3074074-3074143)
chr2 (142-238)||(13538364-13538461)
chr2 (166-235)||(30822764-30822833)
chr2 (142-235)||(565736-565830)
chr2 (187-227)||(42342541-42342581)
chr2 (142-229)||(32859754-32859841)
chr2 (193-235)||(431678-431720)
chr2 (148-238)||(8964368-8964457)
chr2 (169-227)||(33454964-33455022)
chr2 (137-238)||(2825997-2826098)
chr2 (166-227)||(6083954-6084015)
[»] chr6 (6 HSPs)
chr6 (142-228)||(13445782-13445868)
chr6 (141-229)||(33970376-33970464)
chr6 (167-209)||(1840977-1841019)
chr6 (145-227)||(3753147-3753229)
chr6 (194-235)||(29716809-29716850)
chr6 (142-238)||(6586458-6586553)
[»] scaffold0010 (1 HSPs)
scaffold0010 (167-227)||(26695-26755)
[»] scaffold0053 (1 HSPs)
scaffold0053 (167-227)||(5756-5816)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 25176565 - 25175965
Alignment:
Q  1 tgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtgaccaaattcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25176565 tgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtgaccaaattcag 25176466  T
Q  101 gtcctacctctttctacaatgttagatatatatattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattatt 200  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||    
T  25176465 gtcctacctctttctacaatg-tatagatatatattttaaaggtcttgttaacgaatgtccctagggcactctttaaacatgttaaattagataattatt 25176367  T
Q  201 cttttaaaatgtcaaaattttcaatttccgatgcattggtccatattttgattttggtaaatggggtccaa-aaaataatttaaatgtgaggtgtatggt 299  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||  ||||||     |  |||||||||||||||||||||    
T  25176366 cttttaaaatgtcaaatttttcaatttctgatgcactggtccatattttgattttggtaaatgtagtccaatttttttttttaaatgtgaggtgtatggt 25176267  T
Q  300 ccataaaatctaaatctacattgatacaccagaccatatactatagccattacattcctcacg-nnnnnnnnnctatagccattaacttagcataaacaa 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  25176266 ccataaaatctaaatctacattgatacaccagaccatatactatagccattacattcctcacgaaaaaaaaaactatagccattaacttagcataaacaa 25176167  T
Q  399 atgagaggttataccaataaaatgattgcaatatacaccattttaaaatggtgcacaatgactattcnnnnnnnnnnagtcaaattaatattattgtgat 498  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||           |||||||||||||||||||||||    
T  25176166 atgagaagttataccaataaaatgattgcaacatacaccattttaaaatggtgcaaaatgactatt---gtttttttagtcaaattaatattattgtgat 25176070  T
Q  499 gt----taagatttcaacaattagtggttgatggtaattaataaatattttatgtgatgattatatgttttaggtgctgagcaatgcaatatacaagagt 594  Q
    ||    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||||||||||||||    
T  25176069 gttaactaagagttcaacaattagtggttgatggtaattaataaatattttatatgatg--tttatgttttaggtgctgagcaatgcaatatacaagagt 25175972  T
Q  595 gtggaac 601  Q
    |||||||    
T  25175971 gtggaac 25175965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 43492314 - 43492246
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    |||||||||||||||  |||||||  ||||||||||||  |||||||||||||| |||||||| |||||    
T  43492314 gcactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgca 43492246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 39316404 - 39316345
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| ||||||||  |||||||||||  | ||||||||||||||||||||    
T  39316404 cactctttaagcatattaaattaagtaattattcttcaataatgtcaaaattttcaattt 39316345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 27338228 - 27338298
Alignment:
Q  139 aaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||| ||||||||| | |   |||||||||||||||| ||||||||| ||||||||||| ||||    
T  27338228 aaaggtcttgtgaacgagtgttcttggggcactctttaagcatgctaaattagaaaattattctttaaaaa 27338298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 5482511 - 5482447
Alignment:
Q  175 taagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattggt 240  Q
    |||| ||| |||||||  |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  5482511 taagtatgctaaattaagtaattattcttttaaaatgtcaaagttttc-atttccaatgcattggt 5482447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 5907794 - 5907885
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||||| |||||  |||||||||||||||  |||||||  |||||||| |||| |||||||||| ||||  |||||| |||||    
T  5907794 ggtcttgttaacgagtg-ccctagggcactctttaagcattctaaattaagtaattatt-tttttaaatgtcaaacttttttatttccaatgca 5907885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 19619993 - 19620054
Alignment:
Q  174 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||| |||||||   ||||||||||| ||||||||||| |||||||||||| |||||    
T  19619993 ttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaatttccaatgca 19620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 26871737 - 26871825
Alignment:
Q  138 taaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||| |||||||||||||||||   |||||| |||||||||| ||||| |  |||||||||||||||||| | ||| |||| |||||    
T  26871737 taaaggtattgttaacgagtgtcccgg-agcactatttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttgaattt 26871825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 34299880 - 34299795
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |||    ||||| |||||||||| || ||||   ||||||||||| ||||||||||| ||||||||||    
T  34299880 ggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttcaattt 34299795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 38362249 - 38362309
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||| | ||| ||||||||||    
T  38362249 gcactttttaagcattttaaattagataattattcattaaaaatattaaagttttcaattt 38362309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 24299237 - 24299175
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||||||   |||||||| || ||||||||||| |||| ||||||| |||||    
T  24299237 tttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttccaatgca 24299175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 46716173 - 46716231
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaat 225  Q
    ||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| ||||||||    
T  46716173 gcactctttaaccattctaaattaaataattattctttaaaaatatcaaagttttcaat 46716231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 24610946 - 24610889
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    ||||||| |||| ||||||| | ||||||||||||||||||| ||| |||| ||||||    
T  24610946 tctttaaacatgctaaattaaacaattattcttttaaaatgttaaagttttgaatttc 24610889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 27076268 - 27076232
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaag 178  Q
    |||||||||||||||||||| || |||||||||||||    
T  27076268 ggtcttgttaacgagtgtccttagagcactctttaag 27076232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 27202033 - 27202069
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaag 178  Q
    |||||||||||||||||||| || |||||||||||||    
T  27202033 ggtcttgttaacgagtgtccttagagcactctttaag 27202069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 44452176 - 44452086
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    |||||||||||||||| ||| | | |||||||||| |||  |||||||  |||||||| ||| ||||| |||||| ||||||||||| |||||    
T  44452176 gtcttgttaacgagtgcccc-aga-cactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgca 44452086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4781066 - 4781170
Alignment:
Q  1 tgattttgtgtctggacttcaagtacgtaaaggaaatgactggatcactgttaagcctgtccctaatgcttttatcatcaacattggtgaccaaattcag 100  Q
    ||||| ||| ||||||||||||||||||| |||| | || |||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  4781066 tgattatgtatctggacttcaagtacgtagaggagaagattggatcacagttaagcctgtcccaaatgctttcatcatcaatattggtgaccaaattcag 4781165  T
Q  101 gtcct 105  Q
    |||||    
T  4781166 gtcct 4781170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 49951800 - 49951742
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||    
T  49951800 actctttaagcatgctaaattaagtaattattcttttaaaatgtcaaagttttcaattt 49951742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 23136642 - 23136551
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||||| |   ||||||| ||||| || ||||||||  |||||||||||||||||| | ||| |||||||||||| |||||    
T  23136642 tcttgttaacgagtgtctccgaagcactccttaagtatattaaattaagtaattattcttttaaaatttaaaagttttcaatttccaatgca 23136551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 41462020 - 41462091
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||   ||||||||||||||||| |||||    
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaa 41462091  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 53622278 - 53622359
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||| ||| || ||||||||||| ||| ||||||||  ||||| || ||||||||||||||||||||||||||||    
T  53622278 ttgttaacgagtgcccc-at-gcactctttaaacatcttaaattaagtaattttttttttaaaatgtcaaaattttcaatttcc 53622359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 53261531 - 53261620
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||| ||| |   ||||||||||||||| |||||||  |||||||||||| ||||| | ||| |||||||||||| |||||    
T  53261531 ttgttaacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgca 53261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 2818355 - 2818423
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 237  Q
    ||||||||||||| ||||||||   |||||||||||||||| |||||||  |||||||||| |||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgcatt 2818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 52650834 - 52650742
Alignment:
Q  135 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| ||||||||||||||||| | |   | |||||||||| |||| |||||||   |||||||||||  |||||||||||||||||||||    
T  52650834 ttttaagggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattt 52650742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 24546844 - 24546778
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||||||||| | ||| | ||||||||||||||||||||||||  ||||||||||| ||||    
T  24546844 ggtcttgttaacgagtg-ctctagaacactctttaagcatgttaaattaggaaattattctttaaaaa 24546778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 8297833 - 8297935
Alignment:
Q  135 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgc 234  Q
    |||||| ||||||||||||||||| |||    |||||||||||||||   |||||   |||||||||||||||||||||||   || |||||||| ||||    
T  8297833 ttttaagggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgc 8297932  T
Q  235 att 237  Q
    |||    
T  8297933 att 8297935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 17970804 - 17970873
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa-attttcaatttccgatgca 235  Q
    |||||||||||||||| |||||||  ||||||||| |||||||| |||||  |||||||||||| |||||    
T  17970804 gcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgca 17970873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 21241121 - 21241189
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||| ||||||||||||   ||| ||| ||| ||||| |||||||||||||||||| |||||    
T  21241121 gcactctttaaacatgttaaattaagaaatgattttttaaaaatatcaaaattttcaatttccaatgca 21241189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 27963226 - 27963166
Alignment:
Q  168 cactctttaagcatgttaaa-ttagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||  ||||||||| ||| ||||||||||||||||||| | ||||||||||||||    
T  27963226 cactctttacacatgttaaaattaaataattattcttttaaaatattaaaattttcaattt 27963166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 49623057 - 49622997
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    |||| ||||||||| ||||||||  |||||||||  | |||||||||||||||||||||||    
T  49623057 cactatttaagcattttaaattaagtaattattccataaaaatgtcaaaattttcaatttc 49622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 36876165 - 36876098
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    |||||||||||| |||||||  ||| |||||||||||||||| ||  |||||||||||| || |||||    
T  36876165 tctttaagcatgctaaattaagtaactattcttttaaaatgtaaatgttttcaatttccaatacattg 36876098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 45743315 - 45743369
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||| |||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  45743315 tttaagtatgttaaattaagaaattattctttaaaaatgtcaaagttttcaattt 45743369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 50617492 - 50617550
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| |||  |||||||  |||||||| ||||||||||||||| ||||||||||    
T  50617492 actctttaaacattataaattaagtaattatttttttaaaatgtcaaacttttcaattt 50617550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 24175537 - 24175468
Alignment:
Q  140 aaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    |||||||||||||||||||||| ||   ||||||||||||||  ||||||   ||| |||||||||||||    
T  24175537 aaggtcttgttaacgagtgtccttaggacactctttaagcatcctaaatttagtaaatattcttttaaaa 24175468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 47937833 - 47937917
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||||| ||   || ||||||||| |||  |||||||  |||||||||||| |||| |||||| ||||||||||    
T  47937833 ggtcttgttaacgagtgtgccgg-agtactctttaaacatactaaattatgtaattattctttaaaaaagtcaaagttttcaattt 47937917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 32175397 - 32175461
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattc 201  Q
    |||||||||||||||| |||||||| |   | ||||||||||||| ||||||||  |||||||||    
T  32175397 ttaaaggtcttgttaaagagtgtccatgaggtactctttaagcattttaaattaagtaattattc 32175461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 53919889 - 53919933
Alignment:
Q  194 aattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||| | |||| ||||||| ||||||||||||||||||||    
T  53919889 aattattctataaaaaagtcaaaaatttcaatttccgatgcattg 53919933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 1876617 - 1876526
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||| |||    |||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  1876617 tcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgca 1876526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 44220851 - 44220754
Alignment:
Q  136 tttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||| |||||||||||||||||||   |||||| |  |||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||    
T  44220851 tttaaagttcttgttaacgagtgtccccggagcactat--aagcatgttaaattaagtaattattcttttaaaatgtcaaagttttcaatttccaatgca 44220754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 2376859 - 2376779
Alignment:
Q  148 gttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    ||||||||||||  ||| |  ||||||||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  2376859 gttaacgagtgtttctagaatactctttaagcattttaaattaaataattattctttaaaaatatcaaagttttcaatttc 2376779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 11533227 - 11533294
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    |||||||||| ||||||||||||   ||||||||||| ||||||||||| |||||||||||| |||||    
T  11533227 cactctttaaacatgttaaattaataaattattctttaaaaatgtcaaagttttcaatttccaatgca 11533294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 31264966 - 31265053
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||||||| |||| | |||||||||||||||| ||||||||  | ||||||||| |||| ||||||   ||||||||||    
T  31264966 ggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttcc 31265053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 12002261 - 12002329
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    |||||||||||| ||  |||||||  |||||||||||| ||||||| ||| |||||||||||| |||||    
T  12002261 gcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgca 12002329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 24869383 - 24869443
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattct 202  Q
    ||||||||||||||||| |||| | ||||||||||| |||| |||||||  ||||||||||    
T  24869383 ggtcttgttaacgagtgcccctgtggcactctttaaacatgctaaattaagtaattattct 24869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 30158172 - 30158112
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    |||||||||||||  ||||||| ||||||||||||| ||||||| ||| |||| |||||||    
T  30158172 actctttaagcattctaaattaaataattattctttgaaaatgtaaaagtttttaatttcc 30158112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 40298850 - 40298889
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcat 181  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  40298850 ggtcttgttaacgagtgtccctatgacactctttaagcat 40298889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 18842365 - 18842307
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| ||| ||||||||  |||||||||||| ||||||||||| |||| |||||    
T  18842365 actctttaaccattttaaattaagtaattattctttaaaaatgtcaaagtttttaattt 18842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 25279899 - 25279965
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    |||||||||||||||| |||||   ||||||||||||||| ||||||||  | ||||||||| ||||    
T  25279899 gtcttgttaacgagtgcccctacgacactctttaagcatgctaaattaggaagttattctttaaaaa 25279965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 27801363 - 27801290
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    ||||||||||||||||| ||| ||  |||||||||| |||  ||||||   ||||||||||||||||| |||||    
T  27801363 ggtcttgttaacgagtgcccccatgacactctttaatcattctaaatttagtaattattcttttaaaaagtcaa 27801290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 37449541 - 37449594
Alignment:
Q  174 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||| ||||||||  |||||||| ||||||||||||||| ||||||||||    
T  37449541 ttaaacattttaaattaagtaattatttttttaaaatgtcaaacttttcaattt 37449594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 14016979 - 14016911
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    |||||||||||||||| ||||| |  |||| ||||||| ||||| | ||| |||||||||||| |||||    
T  14016979 gcactctttaagcatgctaaataaagtaatgattctttcaaaatttaaaagttttcaatttccaatgca 14016911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 33791874 - 33791789
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||||||||||| |  |||||||||| ||| |||||||  |||||||||||||||||||||||| ||||||||||||    
T  33791874 tcttgttaacgagtgtccctagactactctttaagtatgctaaattaagtaattattcttttaaaatgtcaaatttttcaatttcc 33791789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 39973863 - 39973957
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||||||||||| |    |||||||||||||||| |||||||  |||||||||||||||||||| ||| |||||||||| | ||||||||    
T  39973863 tcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattg 39973957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 40053253 - 40053347
Alignment:
Q  133 tattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||  ||||||||||||||||||| |||  ||||| |||||||||  |||||||| ||||| |||||| ||||||||||| ||||||||||    
T  40053253 tattttatgggtcttgttaacgagtgtctctagtgcactttttaagcattctaaattaggtaattgttctttaaaaatgtcaaagttttcaattt 40053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 35543550 - 35543453
Alignment:
Q  132 atattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||| ||||||||||||||||||||| |  |  |||||| |||||||||| |||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  35543550 atattgtaaaggtcttgttaacgagtgcctttggagcactatttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaatttcc 35543453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 49478781 - 49478875
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaa-ttttcaatttccgatgca 235  Q
    ||||||||||||||||||| ||  || |||||||||||||||| | |||  |||||||| |||| ||||||||||| |||||||||||| |||||    
T  49478781 ggtcttgttaacgagtgtctctggagtactctttaagcatgttgagttaagtaattattttttttaaatgtcaaaagttttcaatttccaatgca 49478875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 3047836 - 3047932
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||||| ||||| |||    |||||||||||||||| |||||||  ||||| |||||| ||||||||||| ||||| |||||| ||||||||    
T  3047836 ggtcttgttaaagagtgcccccggggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattg 3047932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 1656446 - 1656500
Alignment:
Q  183 ttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 237  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||    
T  1656446 ttaaattaaataattattttttaaaaatgtcaaaattttcaatttccaatgcatt 1656500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 48947160 - 48947266
Alignment:
Q  129 tatatattttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    |||||||| ||  ||| ||||||||||||| ||||   ||| |||||||||||  |||||||  |||||||| ||| ||||||||||| |||||||||||    
T  48947160 tatatattatatgggttttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttc 48947259  T
Q  229 cgatgca 235  Q
    | |||||    
T  48947260 caatgca 48947266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37188633 - 37188576
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaat 225  Q
    |||||||||||||| |||||||| ||||||||||  | ||||||||||||||||||||    
T  37188633 cactctttaagcattttaaattaaataattattcaataaaaatgtcaaaattttcaat 37188576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 42573881 - 42573821
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| ||  ||||||||||    
T  42573881 gcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattt 42573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 5423883 - 5423816
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    |||||||||||||| |||  ||| |||| ||||||||||| |||||||||| ||||||||||| ||||    
T  5423883 ggtcttgttaacgaatgttactagagcattctttaagcattttaaattagaaaattattctttaaaaa 5423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 34861349 - 34861262
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||||||| |||    |||||||||||||||  |||||||  |||||||| ||| |||||||||||  |||||||||||    
T  34861349 ggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttcc 34861262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 16113888 - 16113981
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||||| | |    |||||||||||||||  || ||||  |||||||| ||| ||||||||||| |||||||||||| |||||    
T  16113888 ggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgca 16113981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 31042970 - 31043066
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    |||||||||||||| ||||||     || |||||||||||  |||||||  |||||||| ||| ||||||||||| |||||||||| | ||||||||    
T  31042970 ggtcttgttaacgaatgtccccggcacagtctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgcattg 31043066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 33744272 - 33744176
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||| | ||||| ||||  |||||||||||||||| ||||| ||  |||||||| |||||||| ||||||  |||| |||| | ||||||||    
T  33744272 ggtcttgtttaggagtgccccttgagcactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattg 33744176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 290602 - 290645
Alignment:
Q  184 taaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||  |||||||||||||||||||||||| ||||||||||    
T  290602 taaattaagtaattattcttttaaaatgtcaaagttttcaattt 290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 51904665 - 51904614
Alignment:
Q  183 ttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgc 234  Q
    ||||||||  |||||||||||||||||||| ||| |||||||||||| ||||    
T  51904665 ttaaattaagtaattattcttttaaaatgttaaagttttcaatttccaatgc 51904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 27934839 - 27934781
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||  ||||||| ||||||||| ||| ||||| |||||| |||||||||    
T  27934839 actctttaagcattctaaattaaataattattatttaaaaatatcaaaagtttcaattt 27934781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 48811928 - 48811998
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    |||||||||||| ||||||| ||  ||||||||||||||||| || |||  ||||||| ||| ||||||||    
T  48811928 cactctttaagcctgttaaaataagtaattattcttttaaaaagtaaaatatttcaatctccaatgcattg 48811998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 49023 - 48938
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||  |||||   ||||| |||| |||| |||||||  |||||||||||  ||||||| ||| ||||||||||    
T  49023 ggtcttgttaacgagttcccctaggacactcgttaatcatgctaaattaagtaattattcttgaaaaatgtaaaagttttcaattt 48938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 31807917 - 31807832
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| |||   |||||| |||||||||  |||| ||  |||||||||||| ||||||| | | ||||||||||    
T  31807917 ggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaattattctttaaaaatgtgatagttttcaattt 31807832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 48551013 - 48551094
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||   ||||||||||| ||||||||||| ||||||||||    
T  48551013 ttgttaacgagtgtccccagagcactctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattt 48551094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 45757893 - 45757983
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||||||||||||||||||| |   | |||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||    
T  45757893 ttaagggtcttgttaacgagtgtctccggatcactctttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaattt 45757983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 12140145 - 12140201
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  12140145 tttaagcatgctaaattaaataattattcttttaaaatgtcaaagttttcaatttcc 12140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 24313522 - 24313615
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 237  Q
    ||||||||||||||||||     ||||||||||| |||  ||||||| | ||||||||||| ||||||||||| |||||||||| | |||||||    
T  24313522 tcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattttcaatgcatt 24313615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 28692035 - 28691975
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    |||||||||| ||| ||||||||  |||||||||||||||||||| ||| |||||||||||    
T  28692035 cactctttaaacatattaaattaagtaattattcttttaaaatgttaaagttttcaatttc 28691975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 54290920 - 54290827
Alignment:
Q  136 tttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||| |||||||||||||||| ||||    |||||||||||||||| ||||||||  | ||||||||| |||| ||||||   ||||||||||    
T  54290920 tttaagggtcttgttaacgagtatccccggggcactctttaagcatgataaattaggaagttattctttaaaaaagtcaaacagttcaatttcc 54290827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 25317800 - 25317868
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcat 236  Q
    ||||||| ||||||| ||||| |  |||||||||||||||||| | ||| |||||||||||| ||||||    
T  25317800 cactcttcaagcatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgcat 25317868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 43803936 - 43804025
Alignment:
Q  139 aaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||||||||||||| |   | |||||||||||||| |||||| || | ||||||||| |||| ||||||   ||||||||||    
T  43803936 aaaggtcttgttaacgagtgtcc-tcgggtactctttaagcatgataaattggaaagttattctttaaaaaagtcaaacaattcaatttcc 43804025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 37388403 - 37388472
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    |||||||||  |||||||||||  |||||||||||| ||||||| ||| |||||| ||| | ||||||||    
T  37388403 actctttaaatatgttaaattaagtaattattctttaaaaatgtgaaatttttcagttttcaatgcattg 37388472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 45584432 - 45584395
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaat 210  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  45584432 tttaagcatgttaaattaagtaattattcttttaaaat 45584395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 11465761 - 11465677
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||||||  | | ||||||||||| || || ||| | | ||||||||||| |||| |||||||  ||||||||    
T  11465761 gtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattt 11465677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 50604020 - 50604084
Alignment:
Q  140 aaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttt 204  Q
    ||||||||||||||||||||| | |  ||||||||||| |||  |||||||  ||||||||||||    
T  50604020 aaggtcttgttaacgagtgtctccagggcactctttaaccattctaaattaagtaattattcttt 50604084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 54911199 - 54911255
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||| |||  ||||||| ||||||||||||||||||||| ||| |||| |||||    
T  54911199 tctttaaacattctaaattaaataattattcttttaaaatgttaaagttttaaattt 54911255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 38595037 - 38594973
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 237  Q
    |||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  38595037 tttaagtatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcatt 38594973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 10228288 - 10228385
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattggt 240  Q
    ||||||||||||||||||||||||  | |||||||||||||| |||   || |||||||||||| ||||| | ||| |||||||||||||||||| ||||    
T  10228288 aggtcttgttaacgagtgtccctag-gtactctttaagcatgctaataaag-taattattctttcaaaatttaaaagttttcaatttccgatgcactggt 10228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 8208148 - 8208221
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    ||||||||||||||||||    | |||||||||||||||| ||||||| || |||||||||||||||| |||||    
T  8208148 ggtcttgttaacgagtgttttcagagcactctttaagcattttaaatttgaaaattattcttttaaaaagtcaa 8208221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 14309195 - 14309129
Alignment:
Q  171 tctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 237  Q
    ||||||||||| ||||||||  || ||||||||| ||||| ||||| |||||||||||| |||||||    
T  14309195 tctttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaatttccaatgcatt 14309129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 34032234 - 34032141
Alignment:
Q  135 ttttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    |||||| |||||||||||||||||||| |   |||||||||||||||  |||| ||  |||||||||||| |||| || |||  ||||||||||    
T  34032234 ttttaagggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttc 34032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 4695067 - 4695134
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||| ||||||| | ||||||||||| ||||| | ||| |||| ||||||| |||||    
T  4695067 cactctttaagcatgctaaattaaaaaattattctttaaaaatattaaagtttttaatttccaatgca 4695134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 27325917 - 27325863
Alignment:
Q  186 aattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattggt 240  Q
    |||||| |||||||||||| ||||||||||| |||||||||| | ||||| ||||    
T  27325917 aattaggtaattattctttaaaaatgtcaaacttttcaattttcaatgcactggt 27325863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 30501278 - 30501204
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    |||||||||||||||||| ||| |  |||||||||||||||   |||||   ||||||||||||||||| |||||    
T  30501278 aggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaa 30501204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 30541621 - 30541547
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaa 215  Q
    |||||||||||||||||| ||| |  |||||||||||||||   |||||   ||||||||||||||||| |||||    
T  30541621 aggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaa 30541547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 21259523 - 21259470
Alignment:
Q  174 ttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||| ||||||||||| | ||||||||||| || ||||||||||||| |||||    
T  21259523 ttaagaatgttaaattaaaaaattattctttaaagatgtcaaaatttttaattt 21259470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 10051700 - 10051744
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaa 187  Q
    ||||||||||||||||||||||  |||||||||||| || |||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaa 10051744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 17774388 - 17774332
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||| |||||| |  |||||||||||| ||||| ||||| ||||||||||||    
T  17774388 tttaagcattttaaatcaagtaattattctttaaaaatatcaaatttttcaatttcc 17774332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 39335665 - 39335709
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgt 212  Q
    |||||||||| ||| |||||||| ||||||||||||| |||||||    
T  39335665 cactctttaaacattttaaattaaataattattctttaaaaatgt 39335709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 4655072 - 4655013
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||    
T  4655072 cactctttaagcatgctaaattagataattatttttttaaaatatcaaagttttcaattt 4655013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 24389735 - 24389668
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgc 234  Q
    |||||||||||||||| |||||||  ||||||||||||||| |||||||| |||||||||||| ||||    
T  24389735 gcactctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttccaatgc 24389668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 6334805 - 6334713
Alignment:
Q  146 ttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||||||||||    | |||||||||| |||| ||||||| | ||||||| ||| ||||||||||| |||||||||||| ||||||||    
T  6334805 ttgttaacgagtgtcctcggaacactctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatgcattg 6334713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 9049256 - 9049192
Alignment:
Q  173 tttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcatt 237  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||| | |||||||    
T  9049256 tttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattttcaatgcatt 9049192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 21277517 - 21277606
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatt 226  Q
    ||||||||||||||||||||||   |   | ||||||||||| || ||||||||  |||||||| ||||||||||||||| |||||||||    
T  21277517 ttaaaggtcttgttaacgagtgcttccgcatcactctttaagtattttaaattaagtaattatttttttaaaatgtcaaacttttcaatt 21277606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 30869695 - 30869613
Alignment:
Q  144 tcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    ||||||||||||||||| | |  |||||||||||||||| ||||||| ||  ||||||||| ||||||| ||| |||||||||||    
T  30869695 tcttgttaacgagtgtctccagggcactctttaagcatgctaaattaaat--ttattctttaaaaatgttaaagttttcaatttc 30869613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 33634909 - 33634848
Alignment:
Q  168 cactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||| ||||||||||| |||||||||| |||||||| | ||| ||||||||||||    
T  33634909 cactctttaaggatgttaaattaaataattattcgtttaaaatatgaaagttttcaatttcc 33634848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 6411510 - 6411424
Alignment:
Q  143 gtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    |||||||||||||||||  | | |||||| ||||| |||| ||||| |  |||||||||||||||||| | ||| ||||||||||||    
T  6411510 gtcttgttaacgagtgtttccagagcactttttaaacatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttcc 6411424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 12762981 - 12762915
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||| | ||||||  |||||||||||  ||||||| |||||||||||||||| |||||    
T  12762981 actctttaagcatttaaaattaagtaattattcttaaaaaatgttaaaattttcaatttccaatgca 12762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 12848584 - 12848522
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||||| ||||||||  ||| |||||||| | ||||||||| ||||||||||||    
T  12848584 gcactctttaagcatattaaattaagtaactattctttaataatgtcaaagttttcaatttcc 12848522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 3074074 - 3074143
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaa-attttcaatttccgatgca 235  Q
    |||||||||||||||| |||||||  ||||||||| |||||||| |||||  |||||||||||| |||||    
T  3074074 gcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgca 3074143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 13538364 - 13538461
Alignment:
Q  142 ggtcttgttaacgagtgtccct-atagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||||||||||| |||  |  |||||||||||||||  ||||||||| ||||||||||| ||||  |||||   |||||||||| ||||||||    
T  13538364 ggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattg 13538461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 30822833 - 30822764
Alignment:
Q  166 agcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||| |||| | ||||||||  |||||||| ||| ||||||||||| |||||||||||| |||||    
T  30822833 agcactcttaaagctttttaaattaagtaattattttttgaaaatgtcaaagttttcaatttccaatgca 30822764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 565830 - 565736
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataat--tattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||||||||||||||||| | |  |||||||||||||| |||||||  |||   |||||||| ||||||| ||| |||||||||||| |||||    
T  565830 ggtcttgttaacgagtgtcccgagat-actctttaagcatgctaaattaagtaaaagtattctttaaaaatgtgaaagttttcaatttcctatgca 565736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 42342581 - 42342541
Alignment:
Q  187 attagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  42342581 attaaataattattctttaaaaatgtcaaaattttcaattt 42342541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 32859754 - 32859841
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    ||||||||||||||||| ||| |  ||||||||||| |||| ||||||||  | ||||||||| |||| ||||||   ||||||||||    
T  32859754 ggtcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttcc 32859841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 431720 - 431678
Alignment:
Q  193 taattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    |||||||||||| ||||||| |||||||||||||||| |||||    
T  431720 taattattctttaaaaatgttaaaattttcaatttccaatgca 431678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 8964368 - 8964457
Alignment:
Q  148 gttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    ||||||||||||| | | |||||| |||||||||  |||||||  |||||||||||| |||| || |||  ||||||||||| ||||||||    
T  8964368 gttaacgagtgtctcca-agcactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattg 8964457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 33454964 - 33455022
Alignment:
Q  169 actctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||| |||||||   || |||||||| ||||||||||| ||||||||||    
T  33454964 actctttaagcatgctaaattaagaaactattctttaaaaatgtcaaagttttcaattt 33455022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 2826098 - 2825997
Alignment:
Q  137 ttaaaggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcat 236  Q
    |||| |||||||||||||||||||||| | | |||||||||||||  |||| ||   ||||||| ||| |||| || |||  |||| |||||| ||||||    
T  2826098 ttaagggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcat 2825999  T
Q  237 tg 238  Q
    ||    
T  2825998 tg 2825997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 6084015 - 6083954
Alignment:
Q  166 agcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||||||||    
T  6084015 agcactctttaagcatactaaatttagtaattattattttaaaatatcaaagttttcaattt 6083954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 13445868 - 13445782
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttc 228  Q
    |||||||||||||||||||||    |||||||||||||||| |||||||  ||| |||||||| ||||||| ||| |||||||||||    
T  13445868 ggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaattaagtaagtattctttaaaaatgtgaaagttttcaatttc 13445782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 33970464 - 33970376
Alignment:
Q  141 aggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttcc 229  Q
    |||||||||||| |||| |||  | | ||||||||||  ||||||||| | ||||||||||||| ||||| | |||||||| |||||||    
T  33970464 aggtcttgttaatgagtatcctcaaaacactctttaaatatgttaaataaaataattattctttcaaaatttaaaaatttttaatttcc 33970376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 1840977 - 1841019
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaa 209  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  1840977 gcactctttaagcatattaaatttaataattattcttttaaaa 1841019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 3753229 - 3753147
Alignment:
Q  145 cttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    ||||||||| |||| |||| |  ||||||||||||||| ||||| |  |||||||||||| ||||| | ||| ||||||||||    
T  3753229 cttgttaacaagtgcccctgtgccactctttaagcatgataaataaagtaattattctttcaaaatttaaaagttttcaattt 3753147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 29716850 - 29716809
Alignment:
Q  194 aattattcttttaaaatgtcaaaattttcaatttccgatgca 235  Q
    ||||||| ||||||||||||||| |||||||||||| |||||    
T  29716850 aattatttttttaaaatgtcaaagttttcaatttccaatgca 29716809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 6586553 - 6586458
Alignment:
Q  142 ggtcttgttaacgagtgtccctatagcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaatttccgatgcattg 238  Q
    |||||||||||||| || ||||   |||||||||||||||  ||||||||  ||||| ||||| |||| |||| |   |||||||||||||||||||    
T  6586553 ggtcttgttaacgattg-ccctggggcactctttaagcatactaaattaggaaattaatctttgaaaaagtcagatagttcaatttccgatgcattg 6586458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 26695 - 26755
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||||||| |||||||  |||||||| ||||||||||||||| ||||||||||    
T  26695 gcactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattt 26755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 5756 - 5816
Alignment:
Q  167 gcactctttaagcatgttaaattagataattattcttttaaaatgtcaaaattttcaattt 227  Q
    |||||||||||| || ||||||||  ||||| |||||| ||||||||||| ||||||||||    
T  5756 gcactctttaagaattttaaattaagtaatttttctttaaaaatgtcaaagttttcaattt 5816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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