View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8013_low_3 (Length: 575)
Name: NF8013_low_3
Description: NF8013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8013_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 17 - 560
Target Start/End: Complemental strand, 2518338 - 2517795
Alignment:
| Q |
17 |
atcatggattgttctagccaaaaccagaattcgggttttcctgaatgatccatctttaactagagctcacaaaaaatattgcatatgaaattctgtttgt |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2518338 |
atcatggattgttctagccaaaaccggaattcgggttttcctgaatgatccatctttaactagagctcacaaaaaatattgcatatgaaattctgtttat |
2518239 |
T |
|
| Q |
117 |
ttcctgagttcttttcttgttgagaatttcaaggaattgctggatattggaaagtggttatgtgatttgggcttaaaatcccttgatgtgtagcttgtga |
216 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518238 |
ttcctgagttcttttcttgttaggaatttcaaggaattgctggatattggaaagtggttatgtgatttgggcttaaaatcccttgatgtgtagcttgtga |
2518139 |
T |
|
| Q |
217 |
ttagaattttagttttatttttaagtcgagattgaaattaatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2518138 |
ttagaattttagttttatttttaagtcgagattgaaattaatcaaagaatagttgcaacattgaaattgtgtcgtgtagctaccgatgatttttgcataa |
2518039 |
T |
|
| Q |
317 |
ttgcagccaatagctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaag |
416 |
Q |
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| T |
2518038 |
ttgcagccaattgctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaag |
2517939 |
T |
|
| Q |
417 |
agtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaat |
516 |
Q |
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| T |
2517938 |
agtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaat |
2517839 |
T |
|
| Q |
517 |
ttcaatttattacgttgattttgtagtcaagaatgcacttgatg |
560 |
Q |
| |
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| T |
2517838 |
ttcaatttattacgttgattttgtagtcaagaatgcacttgatg |
2517795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 244 - 537
Target Start/End: Complemental strand, 2513892 - 2513601
Alignment:
| Q |
244 |
gagattgaaattaatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtg |
343 |
Q |
| |
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| T |
2513892 |
gagattgaaacttatcaaagaataattgcaatattgaggttgtattgtgcagctactgatgatttttg--taattgcagccgataactggttatggtgtg |
2513795 |
T |
|
| Q |
344 |
tctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaa |
443 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2513794 |
tctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgggaagagtacagcttgatccctgcagcacaaa |
2513695 |
T |
|
| Q |
444 |
tacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattt |
537 |
Q |
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||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| ||| |||||||| |
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| T |
2513694 |
tacattttaaaattgagcacactgatgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattttttatgttgattt |
2513601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 255 - 508
Target Start/End: Complemental strand, 2507221 - 2506970
Alignment:
| Q |
255 |
taatcaaagaatagttgcaacatcgaaattgtgtcgtgtagctaccgatgatttttgcataattgcagccaatagctggctgtggtgtgtctaaagttgt |
354 |
Q |
| |
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||||||||||||| |||||| || ||| |||| | ||| || ||| ||||||||||| ||||||||||| || |||| | |||||||||||||||||| |
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| T |
2507221 |
taatcaaagaataattgcaatattgaagttgtattgtgcagttactgatgatttttg--taattgcagccgttaactggttatggtgtgtctaaagttgt |
2507124 |
T |
|
| Q |
355 |
ggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaa |
454 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || ||||||| ||||||| |
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| T |
2507123 |
ggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgggaagagtacagcttgatccctgcggcacaaatacatttcaaa |
2507024 |
T |
|
| Q |
455 |
attgaacacacagatgttcctctttcgtactatactggaattcttggtatgtat |
508 |
Q |
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||||| || || |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2507023 |
attgagcatactgatgttcctctttcctactatactggaattctaggtatgtat |
2506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 341 - 524
Target Start/End: Original strand, 2428420 - 2428603
Alignment:
| Q |
341 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
440 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| |||||||||||| |
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| T |
2428420 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctc |
2428519 |
T |
|
| Q |
441 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
524 |
Q |
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| T |
2428520 |
aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
2428603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 341 - 524
Target Start/End: Original strand, 1458713 - 1458896
Alignment:
| Q |
341 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
440 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| | ||||| ||||||||||| || ||| |||||||||||| |
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| T |
1458713 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
1458812 |
T |
|
| Q |
441 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
524 |
Q |
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||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1458813 |
aaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
1458896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 314 - 526
Target Start/End: Complemental strand, 2498231 - 2498019
Alignment:
| Q |
314 |
taattgcagccaatagctggctgtggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattggg |
413 |
Q |
| |
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||||||||| |||||| || | ||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||| ||||| || ||| |||| |
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| T |
2498231 |
taattgcaggtaatagcaggttttggggtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatggg |
2498132 |
T |
|
| Q |
414 |
aagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaac |
513 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||||||| |||||| |
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| T |
2498131 |
aagagtacagcttggtcccttcatctcaaatacttttcaaaattgagcacactgatgtcccactttcctactatactggaatactcggtatgttttcaac |
2498032 |
T |
|
| Q |
514 |
aatttcaatttat |
526 |
Q |
| |
|
||||||||||||| |
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| T |
2498031 |
aatttcaatttat |
2498019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 433
Target Start/End: Original strand, 2431399 - 2431491
Alignment:
| Q |
341 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccct |
433 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| ||||| |
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| T |
2431399 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccct |
2431491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 503
Target Start/End: Original strand, 2434784 - 2434943
Alignment:
| Q |
341 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
440 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||| ||| ||| | ||||||| ||||||||||| || ||| | ||| || || |
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| T |
2434784 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactg |
2434883 |
T |
|
| Q |
441 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggta |
503 |
Q |
| |
|
|| ||||||||||||| |||| ||||| || ||||| || ||||| ||||||||||||| |
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| T |
2434884 |
gaa---ttttcaaaattgagcacaatgatgtcccactttcctattataccggaattcttggta |
2434943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 471
Target Start/End: Complemental strand, 50703558 - 50703459
Alignment:
| Q |
371 |
gattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatg |
470 |
Q |
| |
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||||||||||||||||||| ||| ||||| || ||| |||||||||||||||||| | ||| | |||||||||||||||||||||| ||||| |||| |
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| T |
50703558 |
gattataaggaaggtgattaagtttggggattctgtaaatgggaagagtacagcttggtacct-tatctcaaatacttttcaaaattgagcacactgatg |
50703460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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