View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8013_low_4 (Length: 397)
Name: NF8013_low_4
Description: NF8013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8013_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 1081457 - 1081830
Alignment:
| Q |
19 |
tgtttaggaaaatcaaaattaaagtttgaaattagatcatatcaagaaatggtagagagcaagattaagcacatcaatgatgacagtaaagtaagcgaga |
118 |
Q |
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| T |
1081457 |
tgtttaggaaaatcaaaattaaagtttgaaattagatcatatcaagaaatggtagagagcaagattaagcacatcaatgatgacagtaaagtaagcgaga |
1081556 |
T |
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| Q |
119 |
agttatgcaaaacaactgaagaaaaccatgttgtgcaagaacgtactaaagaacatcatctacaaaacaaggaggaggtaatgttatgagactaaagtta |
218 |
Q |
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| T |
1081557 |
agttacgcaaaacaactgaagaaaaccatgttgtgcaagaacgtactaaagaacatcatctacaaaacaaggaggaggtaatgttatgagactaaagtta |
1081656 |
T |
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| Q |
219 |
cattattattattcttgtaatgcccattgatttgtctatgaagattctcgactgttttattatta--ataagttgtgcatagaattggtgaggatgcttt |
316 |
Q |
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| T |
1081657 |
cattattattattcttgtaatgcccattgatttgtctatgaagattctcgactgttttattattaatataagttgtgcatagaattggtgaggatgcttt |
1081756 |
T |
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| Q |
317 |
ccattttgagggtaatcagcaaaaggtgttttgcttttacagcttagtttatttgtacatgtcttctgatgtcc |
390 |
Q |
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| T |
1081757 |
ccattttgagggtaatcagcaaaaggtgttttgcttttacagcttagtttatttgtacatgtcttccgatgtcc |
1081830 |
T |
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