View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8013_low_5 (Length: 352)
Name: NF8013_low_5
Description: NF8013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8013_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2614533 - 2614189
Alignment:
| Q |
1 |
tgtgaaatgaaagttttgtagttgtttgtaggtacatgggttgggggttaggcaattggggataattgtagnnnnnnnn---attgattgtgttttaaag |
97 |
Q |
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| T |
2614533 |
tgtgaaatgaaagttttgtagttgtttgtaggtacatgggttgggggttaggcaattggggataattgtagtttttttttttattgattgtgttttaaag |
2614434 |
T |
|
| Q |
98 |
gtgaaagctttgtttcaatttggaaattggaatggacatagattcttatgtattgtatagtttgt--aataatctatgatttatagaaaaagtgtcacaa |
195 |
Q |
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| T |
2614433 |
gtgaaagctttgtttcaatttggaaattggaatggacatagattcttatgtattgtatagtttgtgtaataatctatgatttatagaaaaagtgtcacaa |
2614334 |
T |
|
| Q |
196 |
atatcttgtttagcatggttcgaatatgactcaatagggctactatgaaatgggagaatactctaggtgtgatttgtgatagaaatttatgtatcaatcg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614333 |
atatcttgtttagcatggttcgaatatgactcaatagggctactatgaaatgggagaatactctaggtgtgatttgtgatagaaatttatgtatcaatcg |
2614234 |
T |
|
| Q |
296 |
ttttagaggaaaattttattgcatagctatgaaatctacaatatt |
340 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614233 |
ttttagaggaaaattttattgcatagctatgaaatctacaatatt |
2614189 |
T |
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