View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8013_low_7 (Length: 269)
Name: NF8013_low_7
Description: NF8013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8013_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 31079121 - 31079279
Alignment:
| Q |
19 |
aattgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattattttttatgtttgctgttctagttaatatgatttgttggtaacatgg |
118 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31079121 |
aattgcggcatcgttctttctggtttctagtgtgttgttttcattcaccattattttttatgtttgctgttctagttaatatgatttgttggtaacatgg |
31079220 |
T |
|
| Q |
119 |
tttagactctagttttcttgtacattattcctgggaaatccagtggttagcagatttta |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31079221 |
tttagactctagttttcttgtacattattcctaggaaatccagtggttagcagatttta |
31079279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 10671889 - 10672027
Alignment:
| Q |
85 |
ctgttctagttaatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctgggaaatccagtggttagcagattttaaaaatga |
184 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||| |||||| |||||| |||||| || |||| |||||||| |
|
|
| T |
10671889 |
ctgttctatttaatatgctttgttggtaacttggtgtagactctagttttcttgtacatcattcct-ttaaatccggtggttggctgattcgaaaaatga |
10671987 |
T |
|
| Q |
185 |
taacactcaattttcgaacacctttagaaccatttgtatg |
224 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
10671988 |
taacactcaattttcaaacaccttgagaaccatttgtatg |
10672027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 9164330 - 9164385
Alignment:
| Q |
19 |
aattgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattattt |
74 |
Q |
| |
|
||||||||||||| ||||||| |||| || |||||||||||| ||||||||||||| |
|
|
| T |
9164330 |
aattgcggcatcgttctttctagtttctaatgtgttgttttcgttcaccattattt |
9164385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 51488740 - 51488796
Alignment:
| Q |
21 |
ttgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattatttttt |
77 |
Q |
| |
|
||||||||||| ||||||| |||| | ||||||||||||| ||||||||| |||||| |
|
|
| T |
51488740 |
ttgcggcatcgttctttctagtttctggtgtgttgttttcgttcaccattctttttt |
51488796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University