View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8014_high_1 (Length: 386)
Name: NF8014_high_1
Description: NF8014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8014_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 2304496 - 2304863
Alignment:
| Q |
15 |
tgatgattttgatgctgcaactgacataattgcaatgaagcaataagtccatgctcctatcaccaaagccatgaaatacagaaccatatagaagctttta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||| |||| |||| |
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| T |
2304496 |
tgatgattttgatgctgcaactgacataattgcaatgaagaaatatgtccatgctcctatcaccaaagccattaaagacagaaccata--gaagattttg |
2304593 |
T |
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| Q |
115 |
tttttgtgtggacatgtcacatatttaacgtttatctttaatatgagtatttcttttaaccagaatttaaactttagccagctttagtttaccatgctgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304594 |
tttttgtgtggacatgtcacatatttaacgtttatctttaatatgagtatttcttttaaccagaatttaaactttagccagctttagtttaccatgctgt |
2304693 |
T |
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| Q |
215 |
tggagtatgttaggagttccacatcggataaataaatgtggagtcatgctatataaagcnnnnnnntacatcacgagattccacgaataatgtatttcag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
2304694 |
tggagtatgttaggagttccacatcggataaataaaagtggaatcatgctatataaagcgaaaaaatacatcacgagattccacgaatagtgtatttgag |
2304793 |
T |
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| Q |
315 |
ttaaacatgattccattttatttccggtttttgtggcattcatgtaggtagtggtgtgtgtgcagttaaa |
384 |
Q |
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| T |
2304794 |
ttaaacatgattccattttatttccggtttttctggcattcatgtaggtagtggtgtgtgtgcagttaaa |
2304863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 45505545 - 45505443
Alignment:
| Q |
284 |
atcacgagattccacgaataatgtatttcagttaaacatgattccattttatttccggtttttgtggcattcatgtaggtagtggtgtgtgtgcagttaa |
383 |
Q |
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|||||||||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||||| |||| ||| |||||| | ||||||| ||| |
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| T |
45505545 |
atcacgagattccacgaaaggtgtatttcagttaaacattaatccattttacttccggtttttgtggcatacatgcaggcagtggtttatgtgcagctaa |
45505446 |
T |
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| Q |
384 |
att |
386 |
Q |
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||| |
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| T |
45505445 |
att |
45505443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 44533304 - 44533235
Alignment:
| Q |
284 |
atcacgagattccacgaataatgtatttcagttaaacatgattccattttatttccggtttttgtggcat |
353 |
Q |
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| T |
44533304 |
atcacgagatttcacgaaagatgtatttctgttaaatactactccattttatttcctgtttttgtggcat |
44533235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 32671029 - 32671095
Alignment:
| Q |
284 |
atcacgagattccacgaataatgtatttcagttaaacatgattccattttatttccggtttttgtgg |
350 |
Q |
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| T |
32671029 |
atcactagattctacgaaaggtgtatttcagttaaacattaatccattttacttccgttttttgtgg |
32671095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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