View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8014_low_2 (Length: 254)
Name: NF8014_low_2
Description: NF8014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8014_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4522020 - 4521779
Alignment:
| Q |
1 |
ctgtgttcaaaatcaactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttggattgactttgagcttatc |
100 |
Q |
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| T |
4522020 |
ctgtgttcaaagtcaactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttggattgactttgagcttatc |
4521921 |
T |
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| Q |
101 |
tactagtatgatatcttatgagactttgaaagaacttatgacatgtgtataagcaatttttataatgtatttctatacgctctataggatagcttacgat |
200 |
Q |
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| T |
4521920 |
tactggtatgataacttatgagactttgaaataacttatgacatgtgtataagcaatttt--taatgtatttctatacgctctataggatagcttacgat |
4521823 |
T |
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| Q |
201 |
aacttattgtacatgaagacaatttgacattttttaatcctttg |
244 |
Q |
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| T |
4521822 |
aacttattgtacatgaagacaatttgacattttttaatcctttg |
4521779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 4511241 - 4511172
Alignment:
| Q |
14 |
caactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttgga |
83 |
Q |
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||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
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| T |
4511241 |
caactatacgaatatctcaaacaacttccttatttttcattttcttgtcattattttgggtcagtttgga |
4511172 |
T |
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