View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8015_low_1 (Length: 600)

Name: NF8015_low_1
Description: NF8015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8015_low_1
NF8015_low_1
[»] chr1 (3 HSPs)
chr1 (23-549)||(5332834-5333360)
chr1 (25-549)||(5350553-5351077)
chr1 (20-112)||(5330181-5330274)
[»] chr6 (1 HSPs)
chr6 (21-75)||(14637550-14637604)


Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 23 - 549
Target Start/End: Complemental strand, 5333360 - 5332834
Alignment:
Q  23 ggtacatcatttttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgttacttgtctttccttatgcctttaatatgctttct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333360 ggtacatcatttttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgttacttgtctttccttatgcctttaatatgctttct 5333261  T
Q  123 aatataccttcagttaccttcctcctctcttcaacatcttaatactatctttttctggtttaaggtttagaaagaagggtcattttgaggttttagtgac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5333260 aatataccttcagttaccttcctcctctcttcaacatcttaatactatctttttctggtttagggtttagaaagaagggtcattttgaggttttagtgac 5333161  T
Q  223 atcatgaagatttctggcttttgtactttgttcttgatggttgtggcagcttttaccttttttagcttcaaaagtaccacagctcccccttggtttccag 322  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333160 atcatgaaggtttctggcttttgtactttgttcttgatggttgtggcagcttttaccttttttagcttcaaaagtaccacagctcccccttggtttccag 5333061  T
Q  323 gtaaatcttctagtatcccttacaataatggaactttttgtaaaatctcttgttgttttattataagaacaagttctttttggttnnnnnnntaagattg 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||       || |||||    
T  5333060 gtaaatcttctagtatcccttacaataatggaactttttgtaaaatgtgttgttgttttattataagaacaagttctttttggttaaaaaattaggattg 5332961  T
Q  423 tatgttttgaacattgtttttgcttatatggtttttcttttcatgttatctgtgactgtgagaagagcagagtgcatgcattggtgatttggtgatgaaa 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332960 tatgttttgaacattgtttttgcttatatggtttttcttttcatgttatctgtgactgtgagaagagcagagtgcatgcattggtgatttggtgatgaaa 5332861  T
Q  523 gcttccaattcacagtctcttatatta 549  Q
    |||||||||||||| ||||||||||||    
T  5332860 gcttccaattcacaatctcttatatta 5332834  T

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Target: chr1; HSP #2
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 25 - 549
Target Start/End: Complemental strand, 5351077 - 5350553
Alignment:
Q  25 tacatcatttttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgttacttgtctttccttatgcctttaatatgctttctaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351077 tacatcatttttattatttgttcttttgattcctacaaatcttgattattttttgtcctttgttacttgtctttccttatgcctttaatatgctttctaa 5350978  T
Q  125 tataccttcagttaccttcctcctctcttcaacatcttaatactatctttttctggtttaaggtttagaaagaagggtcattttgaggttttagtgacat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5350977 tataccttcagttaccttcctcctctcttcaacatcttaatactatctttttctggtttagggtttagaaagaagggtcattttgaggttttagtgacat 5350878  T
Q  225 catgaagatttctggcttttgtactttgttcttgatggttgtggcagcttttaccttttttagcttcaaaagtaccacagctcccccttggtttccaggt 324  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5350877 catgaaggtttctggcttttgtactttgttcttgatggttgtggcagcttttaccttttttagcttcaaaagtaccacagctcccccttggtttccaggt 5350778  T
Q  325 aaatcttctagtatcccttacaataatggaactttttgtaaaatctcttgttgttttattataagaacaagttctttttggttnnnnnnntaagattgta 424  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||       || |||||||    
T  5350777 aaatcttctagtatcccttacaataatggaactttttgtaaaatgtgttgttgttttattataagaacaagttctttttggttaaaaaattaggattgta 5350678  T
Q  425 tgttttgaacattgtttttgcttatatggtttttcttttcatgttatctgtgactgtgagaagagcagagtgcatgcattggtgatttggtgatgaaagc 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5350677 tgttttgaacattgtttttgcttatatggtttttcttttcatgttatctgtgactgtgagaagagcagagtgcatgcattggtgatttggtgatgaaagc 5350578  T
Q  525 ttccaattcacagtctcttatatta 549  Q
    |||||||||||| ||||||||||||    
T  5350577 ttccaattcacaatctcttatatta 5350553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 5330274 - 5330181
Alignment:
Q  20 acaggtacatcatttttattatttgttcttttgattcctacaaatcttgattatt-ttttgtcctttgttacttgtctttccttatgcctttaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5330274 acaggtacatcatttttattatttgttcttttgattcctacaaatcttgattatttttttgtcctttgttacttgtctttccttatgcttttaa 5330181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 14637604 - 14637550
Alignment:
Q  21 caggtacatcatttttattatttgttcttttgattcctacaaatcttgattattt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14637604 caggtacatcatttttattatttgttcttttgattcctacaaatcttgattattt 14637550  T

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