View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8016_high_1 (Length: 591)
Name: NF8016_high_1
Description: NF8016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8016_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 38 - 451
Target Start/End: Original strand, 12868017 - 12868431
Alignment:
| Q |
38 |
ttaattatgttggtgcagggtaaaccaataaacgacattaggaagaaaagttggtggtttatcaaggttcatttttatcaatatagttgagctagatact |
137 |
Q |
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| T |
12868017 |
ttaattatgttggtgcagggtaaaccaataaacgacattaggaagaaaagttggtggtttatctaggttcatttttatcaatatagttgagctagaaaat |
12868116 |
T |
|
| Q |
138 |
cttagtgttggctggaatttgtgaaggtttgtgacttgaaagggggtgatacatgtctattgaagatggtgaatgaggaaaaatttgttttggaagttac |
237 |
Q |
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| T |
12868117 |
cttagtgttggctggaatttgtgaaggtttgtgacttgaaagggggtgatacatgtctattgaagatggtcgatgaggaaaaatttgttttggaagttac |
12868216 |
T |
|
| Q |
238 |
aagttcaagaaacagttgctaaattagagttatgtgttagtctcattgttttatgttttatttctcattccgaactatatggattgaagttg-tttgaac |
336 |
Q |
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| T |
12868217 |
aagttcaagaaacagttgctaaattagagttatgtgttagtctcattgttttatgttttatttctcattccgaactatatggattgaagttgttttgaac |
12868316 |
T |
|
| Q |
337 |
aagatttatttactttttgatgaaattttttaacaaggttttatatatatgcaattattaataatctatcacaatcaacctaactacgatccaagaattc |
436 |
Q |
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| T |
12868317 |
aagatttatttactttttgatgaaattttttaacaagattttatatatatgcaattattaataagctatcacaatcaacctaactacgatccaagaatta |
12868416 |
T |
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| Q |
437 |
cttgatttatttata |
451 |
Q |
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| T |
12868417 |
cttgatttatttata |
12868431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 443 - 578
Target Start/End: Original strand, 12869746 - 12869881
Alignment:
| Q |
443 |
ttatttataagctataacaatccatatatctatagttaccatttgacttttactttacgtaggcttgacctagatgtgcactacaaagatgtaaaaaata |
542 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
12869746 |
ttatttataagctataaccatccatatatctatagttaccatttgacttttactttacgtagggttgacctagatgtgcactgcaaagatgtaaaaaata |
12869845 |
T |
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| Q |
543 |
gattgggggaggaaactgcttctgatttcttcttct |
578 |
Q |
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| T |
12869846 |
gattgggggaggaaactgcttctgatttcttcttct |
12869881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 12965046 - 12964971
Alignment:
| Q |
257 |
taaattagagttatgtgttagtctcattgttttatgttttatttctcattccgaactatatggattgaagttgttt |
332 |
Q |
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| T |
12965046 |
taaattagagttatgtgttagtctcattgttttatgttttatttcttattccaaactacatggattgaaattgttt |
12964971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 15136500 - 15136563
Alignment:
| Q |
144 |
gttggctggaatttgtgaaggtttgtgacttgaaagggggtgatacatgtctattgaagatggt |
207 |
Q |
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| T |
15136500 |
gttggcttgaatttttgaaggattgttacttgaaagagggtgatacttgcctattgaagatggt |
15136563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 15136655 - 15136718
Alignment:
| Q |
269 |
atgtgttagtctcattgttttatgttttatttctcattccgaactatatggattgaagttgttt |
332 |
Q |
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| T |
15136655 |
atgtgtcattctcattgttttatgttttatttttcattccaaacaacatgaattgaagttgttt |
15136718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 49744564 - 49744592
Alignment:
| Q |
42 |
ttatgttggtgcagggtaaaccaataaac |
70 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49744564 |
ttatgttggtgcagggtaaaccaataaac |
49744592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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