View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8016_low_1 (Length: 707)
Name: NF8016_low_1
Description: NF8016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8016_low_1 |
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| [»] scaffold0576 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 19 - 702
Target Start/End: Complemental strand, 14621180 - 14620505
Alignment:
| Q |
19 |
ggtctgaagctgtaagttcttgattttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatgtgttgatgaaatggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14621180 |
ggtctgaagctgtaagttcttgattttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatg--------aaatggt |
14621089 |
T |
|
| Q |
119 |
ttcttgttgtttgtagttataaggaacggtttctttcgtcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14621088 |
ttcttgttgtttgtagttataaggaacggtttctttcttcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgc |
14620989 |
T |
|
| Q |
219 |
tttttatttatgtgcaaagaaacataaggtacatttgtaataatctcaacgtaacacatagtatgtggttcgatattgtaatgatatgatttgtgattgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14620988 |
tttttatttatgtgcaaagaaacataaggtacatttgtaataatctcaacgtaacacatagtatgtggttcgatattgtaatgatatgatttgtgattgt |
14620889 |
T |
|
| Q |
319 |
tatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatatgcaaaatgtacaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14620888 |
tatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatatgcaaaatgtacaa |
14620789 |
T |
|
| Q |
419 |
tgaatctctagtgtgtgatgggtttattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14620788 |
tgaatctctagtgtgtgatgggtttattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaag |
14620689 |
T |
|
| Q |
519 |
acttgtgccatgatgtttttggggttgctaaagaaaagaaagaccctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14620688 |
acttgtgccatgatgtttttggggttgctaaagaaaagaaagaccctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattg |
14620589 |
T |
|
| Q |
619 |
cttaacatagcatgttctattcagtttttgcttttgagtcattgtttttgcattaagcgcgttcttttctgattctctgcttct |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
14620588 |
cttaacatagcatgttctattcagtttttgcttttgagtcattgtttttgcattaagcgcattcttttctgattctctgcttct |
14620505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 2751204 - 2751105
Alignment:
| Q |
300 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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|
| T |
2751204 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
2751105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 702
Target Start/End: Original strand, 17709007 - 17709691
Alignment:
| Q |
19 |
ggtctgaagctgtaagttcttgattttggtgttttaataatgtctgttacgtgtttgatgaaatgctaatgggaatgtgttgatgtgttgatgaaatggt |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||| ||||||| ||| |||||||||||||| |||||||| |||| |
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|
| T |
17709007 |
ggtctgaaactgtaagttcttgattttgttgtttgaataacgtatgttacgtgtttgataaaatgctgatgtgaatgtgttgatgtcttgatgaagtggt |
17709106 |
T |
|
| Q |
119 |
ttcttgttgtttgtagttataaggaacggtttctttcgtcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17709107 |
ttcttgttgtttgtagttataaggaacggtttctttcatcgttgccggctgctcgtcgtgcaagtgctgattttactcgtccggtttttatggctgttgc |
17709206 |
T |
|
| Q |
219 |
tttttatttatgtgcaaagaaacataaggtacatttgtaataatctcaacgtaa-cacatagtatgtggttcgatattgtaatgatatgatttgtgattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || | || |||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
17709207 |
tttttatttatgtgcaaagaaacataaggtacatttgtaataatcttaatgcaaacacacagtatgtggttatatattgtaatgatatgatttatgattg |
17709306 |
T |
|
| Q |
318 |
ttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatatgcaaaatgtaca |
417 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
17709307 |
ttatttgcagctaaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgttttatacgcaaaatgtaca |
17709406 |
T |
|
| Q |
418 |
atgaatctctagtgtgtgatgggtttattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaa |
517 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17709407 |
atgaatctctaatgtgtgatgggtttattaggtttgtgagcggtgttaatgactttaaatgaattgtgaattggtgttgtaggtttctactactatgaaa |
17709506 |
T |
|
| Q |
518 |
gacttgtgccatgatgtttttggggttgctaaagaaaagaaagaccctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtatt |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
17709507 |
gacttgtgccatgatgtttttggggttgctaaagaaaagaaagaccctaaagaagtgaagaccaatagaggtatatacccctttttcagttttatgtatt |
17709606 |
T |
|
| Q |
618 |
gcttaacatagcatgttctattcagtttttgctttt-gagtcattgtttttgcattaagcgcgttcttttctgattctctgcttct |
702 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17709607 |
gcttaacatagcatgttctattcagttattgcttttcgattca-tgtttttgcattaagcgtgttcttttctgattctctgcttct |
17709691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 18204229 - 18204332
Alignment:
| Q |
296 |
gtaatgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaag |
395 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||| | | |||||||| ||||||| ||||||| ||||||| |
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|
| T |
18204229 |
gtaatgatatgatttgtgattgttctttgcaactcaaagttgataagattaagctaattgaagtatttggtacatatgaatcttaattttcaagtgtaat |
18204328 |
T |
|
| Q |
396 |
tgtt |
399 |
Q |
| |
|
|||| |
|
|
| T |
18204329 |
tgtt |
18204332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 5350 - 5449
Alignment:
| Q |
300 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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|
| T |
5350 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
5449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 3734891 - 3734990
Alignment:
| Q |
300 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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|
| T |
3734891 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
3734990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 15360366 - 15360465
Alignment:
| Q |
300 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaactttgtggtacatctgaatctgaattttctagtgtaagtgtt |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| | | |||||||| | ||||||||||||| ||||||| |||| |
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|
| T |
15360366 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaagtatttggtacatatcaatctgaattttcaagtgtaattgtt |
15360465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 28659216 - 28659273
Alignment:
| Q |
300 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaa |
357 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
28659216 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaa |
28659273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 20265384 - 20265441
Alignment:
| Q |
300 |
tgatatgatttgtgattgttatttgcagctgaaagttgataagattaagctgattgaa |
357 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||| |
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|
| T |
20265384 |
tgatatgatttgtgattgttctttgcagctcaaagttgataaggttaagctaattgaa |
20265441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 4601345 - 4601404
Alignment:
| Q |
291 |
atattgtaatgatatgatttgtgattgttatttgcagctgaaagttgataagattaagct |
350 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||| || |||||| ||||||||||||| |
|
|
| T |
4601345 |
atatggtaatgatatgacttgtgattgttctttgcatctcaaagtttataagattaagct |
4601404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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