View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8016_low_4 (Length: 395)
Name: NF8016_low_4
Description: NF8016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8016_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 9405196 - 9404814
Alignment:
| Q |
1 |
cgcaagcatctctgtcaaccattttttaattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtgg |
100 |
Q |
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| T |
9405196 |
cgcaagcatctctgtaaaccattttttaattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtgg |
9405097 |
T |
|
| Q |
101 |
cagtatctatagtcaaaggcatacctattgcaccagcaattttaaaaagagtctaatcaaaccaatattcttgatgaagctccattattcttattccaac |
200 |
Q |
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| T |
9405096 |
cagtatctatagtcaaaggcatacctattgcaccagcaattttaaaaagagtctaatcaaaccaatattcttgatgaagctccattattcttattccaac |
9404997 |
T |
|
| Q |
201 |
atggtcatgggtttcacggtatgagtgagtgttgaaatcttttgtccactaacaaaactgagaactcctgactttatattgttaatgtacatcagccaaa |
300 |
Q |
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| T |
9404996 |
atggtcatgggtttcacggtatgagtgagtgttgaaatcttttgtccactaacaaaactgagaactcctgactttatattgttaatgtacatcagccaaa |
9404897 |
T |
|
| Q |
301 |
cacagcgtatgtcttcaactaaggcgaaagtgaattcaagaaaacgatgtcctaaggagatcatcttctaatgattggatatt |
383 |
Q |
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| T |
9404896 |
cacagcgtatgtcttcaactaaggcaaaagtgaattcaagaaaacgatgtcctaaggagatcatcttctaatgattggatatt |
9404814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 2989645 - 2989726
Alignment:
| Q |
9 |
tctctgtcaaccattttttaattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaataccc |
90 |
Q |
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| T |
2989645 |
tctctttcaaccattatttgataaaaaatgcggcgagaaaaatcaatatccaccaaaatacgagcataatgactgaataccc |
2989726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 20600499 - 20600630
Alignment:
| Q |
9 |
tctctgtcaaccattttttaattaaaaatgtggtgagtaaaaacaatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatct |
108 |
Q |
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||||| ||||||||| ||| || ||| || ||| || |||| |||||||| ||||||| |||||||||||||| || | || ||||||||||||| |
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| T |
20600499 |
tctctttcaaccattatttcatcaaatatacggtaagaaaaatcaatatcacccaaaatgcgagcataatgaccgaactcgattttatgtggcagtatct |
20600598 |
T |
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| Q |
109 |
atagtcaaaggcatacctattgcaccagcaat |
140 |
Q |
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| T |
20600599 |
atagttaaaggtgtagctattgcaccagcaat |
20600630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 19736961 - 19736894
Alignment:
| Q |
47 |
aaaaacaatatcaaccaaaatacgagcataatgaccaaatacccga--ttgtgtggcagtatctatag |
112 |
Q |
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|||| |||||||||||||||| |||||||||| ||| | || ||| |||||||||||||||||||| |
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| T |
19736961 |
aaaatcaatatcaaccaaaatgcgagcataattaccgagcactcgattttgtgtggcagtatctatag |
19736894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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