View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8016_low_5 (Length: 251)
Name: NF8016_low_5
Description: NF8016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8016_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 24743693 - 24743573
Alignment:
| Q |
132 |
tgatagactatattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggt-aaactgttgaaattttattgtgggtttagatgatat |
230 |
Q |
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| T |
24743693 |
tgatagactagattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaaactgttgaaattttattgtgggtttagatgatat |
24743594 |
T |
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| Q |
231 |
gttctgatagctgccagcaat |
251 |
Q |
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| T |
24743593 |
gttctgatagctgccagcaat |
24743573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 24743781 - 24743681
Alignment:
| Q |
17 |
tgacgattatcgatgctggagaagtta---attcggagaaaatcaatggtgatgctaatgttatcactgtttgaagggctaatgaaggtgattgactaga |
113 |
Q |
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| T |
24743781 |
tgacgattatcgatgctggagaagttattaattcggagaaaatcaatggtgatgctaatgttatcactgcttgaagggctaatgaaggtgatagactaga |
24743682 |
T |
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| Q |
114 |
t |
114 |
Q |
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| T |
24743681 |
t |
24743681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 45911624 - 45911532
Alignment:
| Q |
84 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
176 |
Q |
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| T |
45911624 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
45911532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 19675318 - 19675226
Alignment:
| Q |
84 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
176 |
Q |
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|||||| |||||||||||||| | ||| |||||||||| ||| |||||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
19675318 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
19675226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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