View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8016_low_6 (Length: 238)
Name: NF8016_low_6
Description: NF8016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8016_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24743378 - 24743156
Alignment:
| Q |
1 |
ctcttagtctgcttaatcttggtctggtgtatttggattccatgggtagttaagtgtttggaagtagaatttattaatcattaaagataagatatttgta |
100 |
Q |
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| T |
24743378 |
ctcttagtctgcttaatcttggtctggtgtatttgaattccatgggtagttaagtgtttggaagtagaatttattaatcattaaagataagatatttgta |
24743279 |
T |
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| Q |
101 |
ctttgttgtttttctaatgagtgttgcttcannnnnnnagctcggtgaactatatggtttactatgatttccccatgatagtggattgtccttgtgttct |
200 |
Q |
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| T |
24743278 |
ctttgttgtttttctaatgagtgttgcttcatttttttagctcggtgagctatatggttgactatgatttccccatgatagtggattgtccttgtgttct |
24743179 |
T |
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| Q |
201 |
atgctgcaatataaggtcatatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
24743178 |
atgctgcaatataaggtcatatt |
24743156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 32548516 - 32548298
Alignment:
| Q |
4 |
ttagtctgcttaatcttggtctggtgtatttggattccatgggtagttaagtgtttggaagtagaatttattaatcattaaagataagata-tttgtact |
102 |
Q |
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||||||||||| | | |||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||| |||| |
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| T |
32548516 |
ttagtctgctttagcatggtttggtgtacttgaattccatgggtagttaagtgttcagaagtggaatttattaatcattaaagataaaatattttatact |
32548417 |
T |
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| Q |
103 |
ttgttgtttttctaatgagtgttgcttcannnnnnnagctcggtgaactatatggtttactatgattt--ccccatgatagtggattgtccttgtgttct |
200 |
Q |
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| T |
32548416 |
ctgttgtttttctaacgagtcttgcttca-ttttttagatcagtgagctatatgattgactataattttcccccctgatagtggactgtccttgtgttct |
32548318 |
T |
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| Q |
201 |
atgctgcaatataaggtcat |
220 |
Q |
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|||||||| ||| ||||||| |
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| T |
32548317 |
atgctgcagtatgaggtcat |
32548298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 41532145 - 41532062
Alignment:
| Q |
139 |
agctcggtgaactatatggtttactatgatttccc-catgatagtggattgtccttgtgttctatgctgcaatataaggtcata |
221 |
Q |
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|||| ||||| |||||||||| |||| |||||||| | ||||||| || |||||||||||| ||||||||| ||| |||||||| |
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| T |
41532145 |
agcttggtgagctatatggttgactaagatttccctcctgatagtcgactgtccttgtgttatatgctgcagtatgaggtcata |
41532062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 23429113 - 23429027
Alignment:
| Q |
1 |
ctcttagtctgcttaatcttggtctggtgtatttggattccatgggtagttaagtgtttggaagtagaatttattaatcattaaaga |
87 |
Q |
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|||||||||| ||||| | |||||| ||||| ||||||||||||||| || || | || | |||||||||| |||||| |||||||| |
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| T |
23429113 |
ctcttagtctacttaagcatggtcttgtgtacttggattccatgggtggtcaactattcgaaagtagaattgattaattattaaaga |
23429027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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