View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8017_high_3 (Length: 267)
Name: NF8017_high_3
Description: NF8017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8017_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 14901322 - 14901085
Alignment:
| Q |
14 |
ttctcatcattttcaacaattggttccaagatagaacctttcttctccaaaatctccttttgatttgtacttgatgactgcagcagctttcccatttttc |
113 |
Q |
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| T |
14901322 |
ttctcatcattttcaacaattggttccaaggtagaacctttcttctccaaaatctccttttgattagtacttgatgacttcagcagctttcccatttttc |
14901223 |
T |
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| Q |
114 |
ctttataaacacaccttctttttgacacgtttgattcagtagagtttcctgattggtctatggaattttgcataacctcgtgccaaacatgtggctgttc |
213 |
Q |
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| T |
14901222 |
ctttataaacacaccttcgttttgacacatttgattcggtagagtttcctgattggtctatggaattttgcataacctcgtgtaaaacatgtggttgttc |
14901123 |
T |
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| Q |
214 |
ttcttcaacttgtttatctgattttgaagccaaatctg |
251 |
Q |
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| T |
14901122 |
ttcttcaacttgtttatctgattttgaagccaaatctg |
14901085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 14908087 - 14907869
Alignment:
| Q |
11 |
ttattctcatcattttcaacaattggttccaagatagaacctttcttctccaaaatctccttttgatttgtacttgatgactgcagcagctttcccattt |
110 |
Q |
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| T |
14908087 |
ttattctcatcattttcaacaataggttctgagatagaacttttcttctccgaaatctccttttgatttgtacttgaaatctcc--------------tt |
14908002 |
T |
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| Q |
111 |
ttcctttataaacacaccttctttttgacacgtttgattcagtagagtttcctgattggtctatggaattttgcataacctcgtgccaaacatgtggctg |
210 |
Q |
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| T |
14908001 |
ttcctttataaacacgccttctttttgacatgtttgattcagtaaagtttcctgattggtctgtggaattttgcattacctcgtgtaaaacaagtg---g |
14907905 |
T |
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| Q |
211 |
ttcttcttcaacttgtttatctgattttgaagccaa |
246 |
Q |
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| T |
14907904 |
ttgttcttcaacttgtttatctgattttgaagccaa |
14907869 |
T |
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