View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8017_low_1 (Length: 516)
Name: NF8017_low_1
Description: NF8017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8017_low_1 |
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| [»] scaffold0002 (7 HSPs) |
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| [»] scaffold1869 (1 HSPs) |
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| [»] scaffold0263 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 430; Significance: 0; HSPs: 7)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Original strand, 401680 - 402169
Alignment:
| Q |
11 |
ataatatcagctgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgatag |
110 |
Q |
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| T |
401680 |
ataatatcagctgggaaattatttaaagaatctgggtaggacttcacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgatag |
401779 |
T |
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| Q |
111 |
gagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctatatgttggggtttagatagattggaatgagca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
401780 |
gagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctttatgttggggtttagatagattggaatgagta |
401879 |
T |
|
| Q |
211 |
actctaatttatgcatgcccttttataaggctacttctccttctt-aatgatgtcatctgcatttgtcataccattacatcttatgtttatctaatcatt |
309 |
Q |
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| T |
401880 |
actctaatttatgcattcccttttataaggctacttctccttcttaaatgatgtcatctgcatttgtcataccattacatcttatgtttatctaatcatt |
401979 |
T |
|
| Q |
310 |
tttaatttgcatcgatcaatcgtggagaaatatgcatccaaatttcctctatgtatattaattaatttaataacaccaaataattaacagggaaggtcta |
409 |
Q |
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| T |
401980 |
tttaatttccatcaaccaatggtggagaaatatgcatccaaatttcctctatgtatattaattaatttaataacaccaaataattaaaaaggaaggtcta |
402079 |
T |
|
| Q |
410 |
cgagatgagcttcacatgtttatactcataagattcttaatcaaattattatgatctacatccatttcatcttcacactatggtggttag |
499 |
Q |
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| T |
402080 |
cgagatgagcttcacatgtttatactcataagattcttaatcaaattattatgatctacatccatttcatgttcagactatggttgttag |
402169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 352 - 499
Target Start/End: Original strand, 405442 - 405589
Alignment:
| Q |
352 |
tttcctctatgtatattaattaatttaataacaccaaataattaacagggaaggtctacgagatgagcttcacatgtttatactcataagattcttaatc |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
405442 |
tttcctctatgtatattaattaatttaataacaccaaataattaataaggaaggtctacgagatgagcttcacatgtttatactcataagattattaatc |
405541 |
T |
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| Q |
452 |
aaattattatgatctacatccatttcatcttcacactatggtggttag |
499 |
Q |
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| T |
405542 |
aaattattatgatctacatccatttcatgttcacactatggttgttag |
405589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 405323 - 405438
Alignment:
| Q |
106 |
gataggagctgttgacattttggaggatcgatatatgagaaattaatatatacttt-gttttttgtgttttctatatgttggggtttagatagattggaa |
204 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
405323 |
gataggagctgttgacatttcggaggatcgatatatgagaaattaatatataatttctttttttgtgttttccatatgttggggtttagatagattggaa |
405422 |
T |
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| Q |
205 |
tgagcaactctaattt |
220 |
Q |
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|||| ||||||||||| |
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| T |
405423 |
tgagtaactctaattt |
405438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 94694 - 94764
Alignment:
| Q |
297 |
ttatctaatcatttttaatttgcatcgatcaatcgtggagaaatatgcatccaaatttcctctatgtatat |
367 |
Q |
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| T |
94694 |
ttatctaatcatttttaatttccatcgatcaatcgtggagaaatattcatccaaatttcctatatatatat |
94764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 402944 - 403014
Alignment:
| Q |
267 |
ctgcatttgtcataccattacatcttatgtttatctaatcatttttaatttgcatcgatcaatcgtggaga |
337 |
Q |
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| T |
402944 |
ctgcatttgtcatacaattacatcttatgcttatctaatcatttttaatttccatcgaacaatcgtggaga |
403014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 93525 - 93611
Alignment:
| Q |
22 |
tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat |
108 |
Q |
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| T |
93525 |
tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat |
93611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 93825 - 93857
Alignment:
| Q |
257 |
atgatgtcatctgcatttgtcataccattacat |
289 |
Q |
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| T |
93825 |
atgatgtcatctgcatttgtcataccattacat |
93857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1869 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: scaffold1869
Description:
Target: scaffold1869; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 254 - 380
Target Start/End: Complemental strand, 1239 - 1113
Alignment:
| Q |
254 |
ttaatgatgtcatctgcatttgtcataccattacatcttatgtttatctaatcatttttaatttgcatcgatcaatcgtggagaaatatgcatccaaatt |
353 |
Q |
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| T |
1239 |
ttaatgatgtcatctgcatttgtcataccattacatcttatgtttatctaatcatttttaatttccatcgatcaatcgtggagaattatgcatccaaatt |
1140 |
T |
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| Q |
354 |
tcctctatgtatattaattaatttaat |
380 |
Q |
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|||||| | |||||||||||||||||| |
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| T |
1139 |
tcctctctatatattaattaatttaat |
1113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 15355 - 15441
Alignment:
| Q |
22 |
tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat |
108 |
Q |
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|||||||||||| | |||| ||||||| | ||| |||||||||||||||| |||||||| ||||| ||| |||||||||||||||| |
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| T |
15355 |
tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat |
15441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 15656 - 15700
Alignment:
| Q |
257 |
atgatgtcatctgcatttgtcataccattacatcttatgtttatc |
301 |
Q |
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| T |
15656 |
atgatgtcatctacatttgtcataccattacattttatgtttatc |
15700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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