View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8017_low_2 (Length: 431)

Name: NF8017_low_2
Description: NF8017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8017_low_2
NF8017_low_2
[»] chr1 (6 HSPs)
chr1 (24-335)||(27488997-27489299)
chr1 (24-336)||(27481799-27482104)
chr1 (356-414)||(9316096-9316154)
chr1 (356-414)||(21814953-21815011)
chr1 (360-414)||(27048261-27048315)
chr1 (356-414)||(47294155-47294213)
[»] chr6 (7 HSPs)
chr6 (350-414)||(14118586-14118650)
chr6 (350-414)||(14122544-14122608)
chr6 (350-413)||(7826123-7826186)
chr6 (350-413)||(10800600-10800663)
chr6 (356-414)||(18765823-18765881)
chr6 (350-413)||(24908556-24908619)
chr6 (356-414)||(1051355-1051413)
[»] chr5 (2 HSPs)
chr5 (350-414)||(9335177-9335241)
chr5 (350-413)||(40821357-40821420)
[»] chr3 (5 HSPs)
chr3 (350-414)||(18866912-18866976)
chr3 (350-413)||(4675061-4675124)
chr3 (356-414)||(4501252-4501310)
chr3 (356-406)||(4506578-4506628)
chr3 (356-414)||(27900664-27900722)
[»] chr7 (6 HSPs)
chr7 (350-413)||(41542595-41542658)
chr7 (350-413)||(28442581-28442644)
chr7 (356-414)||(9701926-9701984)
chr7 (356-414)||(41454942-41455000)
chr7 (356-414)||(43364383-43364441)
chr7 (356-414)||(48455520-48455578)
[»] chr2 (3 HSPs)
chr2 (350-414)||(33033885-33033949)
chr2 (350-413)||(44611378-44611441)
chr2 (356-414)||(43669907-43669966)
[»] chr8 (4 HSPs)
chr8 (356-418)||(44245932-44245994)
chr8 (356-414)||(9906936-9906994)
chr8 (368-414)||(38657391-38657437)
chr8 (356-397)||(5064045-5064086)
[»] scaffold0045 (2 HSPs)
scaffold0045 (350-414)||(2768-2833)
scaffold0045 (350-414)||(9150-9215)
[»] scaffold0265 (1 HSPs)
scaffold0265 (356-414)||(17798-17856)
[»] chr4 (2 HSPs)
chr4 (356-414)||(13568165-13568223)
chr4 (356-414)||(667701-667759)
[»] scaffold0291 (1 HSPs)
scaffold0291 (356-414)||(1736-1794)
[»] scaffold0012 (1 HSPs)
scaffold0012 (356-414)||(202536-202594)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 335
Target Start/End: Complemental strand, 27489299 - 27488997
Alignment:
Q  24 atttcgcactggagctatgggacatatgtacttctatttggctgatcgactaccacacggaaaatattcatcatattcctacgatttgtaattgtttaat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  27489299 atttcgcactggagctatgggacatatgtacttctatttggctgatcgactaccacacggaaaatattcattatattcctatgatttgtaattgtttaat 27489200  T
Q  124 gcatgatttcttcatgatatatagtattgaacgtgtcgtgtcaacattaggtgnnnnnnnaatagaaagagttcaaatcacactggg---attgttaaat 220  Q
    ||||||||| ||||||||||||||||||||            |||||||||||       |||||||||||||||||||||||||||   ||||||||||    
T  27489199 gcatgatttattcatgatatatagtattga------------aacattaggtgttttctcaatagaaagagttcaaatcacactgggatcattgttaaat 27489112  T
Q  221 gtttttgtgctccgttttaaataataatgattttcctcatttcaaatttttaatnnnnnnntgtgtttaagaacaatggtaactattgctttaagtggaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||    
T  27489111 gtttttgtgctccgttttaaataataatgattttcctcatttcaaatttttaataaaaaaatgtgtttaagaacaatggtaactattgctttaagtgcaa 27489012  T
Q  321 aggggtttgtaacta 335  Q
    || ||||||||||||    
T  27489011 agcggtttgtaacta 27488997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 27482104 - 27481799
Alignment:
Q  24 atttcgcactggagctatgggacatatgtacttctatttggctgatcgactaccacacggaaaatattcatcatattcctacgatttgtaattgtttaat 123  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27482104 atttcacactggagctatggggcatatgtacttctatttggctgatcgactaccacacggaaaatattcatcatattcctatgatttgtaattgtttaat 27482005  T
Q  124 gcatgatttcttcatgatatatagtattgaacgtgtcgtgtcaacattaggtgnnnnnnnaatagaaagagttcaaatcacactggg---attgttaaat 220  Q
    ||||||||||||||||||||||||||||||            |||||||||||       |||||||||||||||||||||||||||   ||||||||||    
T  27482004 gcatgatttcttcatgatatatagtattga------------aacattaggtgttttctcaatagaaagagttcaaatcacactgggatcattgttaaat 27481917  T
Q  221 gtttttgtgctccgttttaaataataatgattttcctcatttcaaatttttaat--nnnnnnntgtgtttaagaacaatggtaactattgctttaagtgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||    
T  27481916 gtttttgtgctccgttttaaataataatgattttcctcatttcaaatttttaataaaaaaaaatgtgtttaagaacaatggtaattattgctttaagtgg 27481817  T
Q  319 aaaggggtttgtaactag 336  Q
    |||||| |||||||||||    
T  27481816 aaagggatttgtaactag 27481799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 9316096 - 9316154
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9316096 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9316154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 21814953 - 21815011
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  21814953 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 21815011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 27048261 - 27048315
Alignment:
Q  360 gtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||    
T  27048261 gtattctcggattagtgttggagatcctaattatcaattgatattatcacatatt 27048315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 47294155 - 47294213
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    |||||||||||  ||||||||||||  || ||||||||||||||||||||| |||||||    
T  47294155 atacgtattctaagattagtgttgcgaattctaattatcaattgatattatcacatatt 47294213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 14118650 - 14118586
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14118650 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacatatt 14118586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 14122608 - 14122544
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14122608 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacatatt 14122544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 7826123 - 7826186
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7826123 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 7826186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 413
Target Start/End: Complemental strand, 10800663 - 10800600
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10800663 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 10800600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 18765823 - 18765881
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  18765823 atacgtattcttggattagtgttgcggattctaattatcaattgatattatcacatatt 18765881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 24908556 - 24908619
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  24908556 ctattcatatgtattctcggattagtgttgcaaatcctaactattaattgatattatcacatat 24908619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 1051355 - 1051413
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||||||| |||||||    
T  1051355 atacatattctaggattagttttgcagattctaattatcaattgatattatcacatatt 1051413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 9335241 - 9335177
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  9335241 ctattcatacgtattctcggattagtgttgcatatcctaattatcaattgatattatcacatatt 9335177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 413
Target Start/End: Complemental strand, 40821420 - 40821357
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  40821420 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 40821357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 18866912 - 18866976
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  18866912 ctattcatacgtattctcggattagtattgcagatcctaattatcaattgatattatcacatatt 18866976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 4675061 - 4675124
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  4675061 ctattcatacgtattctcggattagtgttgcagatcttaattatcaattgatattatcacatat 4675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 4501252 - 4501310
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  4501252 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 4501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 4506578 - 4506628
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattat 406  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  4506578 atacgtattctaggattagtgttgcggattctaattatcaattgatattat 4506628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 27900664 - 27900722
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||   || ||||||||||||||||||||| |||||||    
T  27900664 atacgtattctcggattagtgttgtgtattctaattatcaattgatattatcacatatt 27900722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 41542595 - 41542658
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  41542595 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 41542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 28442581 - 28442644
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||    
T  28442581 ctattcatatgtattctcggattagtgttgcatatcttaattatcaattgatattatcacatat 28442644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 9701926 - 9701984
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9701926 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9701984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 41455000 - 41454942
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||||||||| |||||||    
T  41455000 atacgtattctaggattaatgttgcggattctaattatcaattgatattatcacatatt 41454942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 43364383 - 43364441
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||||||    
T  43364383 atacgtactcttggattagtgttgcggattctaattatcaagtgatattatcacatatt 43364441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 48455520 - 48455578
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||| ||| ||| ||||||||| ||||||||||| |||||||    
T  48455520 atacgtattctcggattagtgatgcggattctaattatcgattgatattatcacatatt 48455578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 33033885 - 33033949
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  33033885 ctattcatacatattctcggattagtgttgccgatcctaattatcaattgatattatcacatatt 33033949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 44611378 - 44611441
Alignment:
Q  350 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 413  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  44611378 ctattcatatgtattctcggattagtgttgcaaatcctaattatcaattgatattatcacatat 44611441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 43669907 - 43669966
Alignment:
Q  356 atacgtattcttggatta-gtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||| |||||||    
T  43669907 atacgtattctcggattaagtgttgcggattctaattatcaattgatattatcacatatt 43669966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 44245994 - 44245932
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatattcttc 418  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  44245994 atacgtattcttggattagtgttgcggattctaactatcaattgatattatcacatattcttc 44245932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 9906994 - 9906936
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9906994 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9906936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 38657391 - 38657437
Alignment:
Q  368 ggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  38657391 ggattagtgttgcggattctaattatcaattgatattatcacatatt 38657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 5064086 - 5064045
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaat 397  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  5064086 atacgtattctcggattagtgttgcggattctaattatcaat 5064045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 2833 - 2768
Alignment:
Q  350 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  2833 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacatatt 2768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 9215 - 9150
Alignment:
Q  350 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  9215 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacatatt 9150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 17856 - 17798
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  17856 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 17798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 13568165 - 13568223
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  13568165 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 13568223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 667759 - 667701
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||||||||  |||  |||||||||||||||||||| |||||||    
T  667759 atacgtattctcggattagtgttgtggattataattatcaattgatattatcacatatt 667701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 1794 - 1736
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  1794 atacgtatactcggattagtgttgcggattctaattatcaattgatattatcacatatt 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 202536 - 202594
Alignment:
Q  356 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 414  Q
    ||||||||||| ||||||| ||||| ||| |||||| ||||||| |||||| |||||||    
T  202536 atacgtattctcggattagcgttgcggattctaattctcaattggtattatcacatatt 202594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University